miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5753 3' -59.3 NC_001806.1 + 88554 0.66 0.798834
Target:  5'- aGACGcGGUaaaacaGAGCGGG-GCGCGUCUCg -3'
miRNA:   3'- -CUGU-CCGc-----CUUGUCCaCGCGCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 112058 0.66 0.798834
Target:  5'- aGGCccuGGaCGGGACGGGUaucgGCGCGcaUCgCCa -3'
miRNA:   3'- -CUGu--CC-GCCUUGUCCA----CGCGC--AGgGG- -5'
5753 3' -59.3 NC_001806.1 + 78381 0.66 0.790011
Target:  5'- -cCAGGCGcuGGCGgcGGUGaGCGUCCUCg -3'
miRNA:   3'- cuGUCCGCc-UUGU--CCACgCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 64810 0.66 0.790011
Target:  5'- --gGGGaCGGggUAGGccgUGCcCGUUCCCa -3'
miRNA:   3'- cugUCC-GCCuuGUCC---ACGcGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 53097 0.66 0.790011
Target:  5'- aGACGGugaGCGaGGACGGGggGCGUGUCUa- -3'
miRNA:   3'- -CUGUC---CGC-CUUGUCCa-CGCGCAGGgg -5'
5753 3' -59.3 NC_001806.1 + 57155 0.66 0.781053
Target:  5'- cGCgAGG-GGAGgGGGUGCGCGcauaaagCCCa -3'
miRNA:   3'- cUG-UCCgCCUUgUCCACGCGCa------GGGg -5'
5753 3' -59.3 NC_001806.1 + 20910 0.66 0.781053
Target:  5'- gGACgaAGcGCGGGAgGGGgaucgGC-CGUCCCUg -3'
miRNA:   3'- -CUG--UC-CGCCUUgUCCa----CGcGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 88806 0.66 0.771967
Target:  5'- -uCAGGCccaGGAGCGuGUGaCG-GUCCCCg -3'
miRNA:   3'- cuGUCCG---CCUUGUcCAC-GCgCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 69057 0.66 0.771967
Target:  5'- cGCAGcCGcGAGgAGGUGCGCGUgucgacggCCCUc -3'
miRNA:   3'- cUGUCcGC-CUUgUCCACGCGCA--------GGGG- -5'
5753 3' -59.3 NC_001806.1 + 2852 0.66 0.762763
Target:  5'- cGCGGGCGcGGGgAGGgggGCGCGggcgUCCg -3'
miRNA:   3'- cUGUCCGC-CUUgUCCa--CGCGCa---GGGg -5'
5753 3' -59.3 NC_001806.1 + 9941 0.66 0.762763
Target:  5'- uACAGGcCGGAGuguugUGGG-GaCGCGUCCCg -3'
miRNA:   3'- cUGUCC-GCCUU-----GUCCaC-GCGCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 4424 0.66 0.762763
Target:  5'- gGGgGGGUGGcccgGGCGGGgGCGgCGUCCgCCc -3'
miRNA:   3'- -CUgUCCGCC----UUGUCCaCGC-GCAGG-GG- -5'
5753 3' -59.3 NC_001806.1 + 144574 0.66 0.753449
Target:  5'- -cCGGGCGcGucCGGGUGCcGCGgcUCUCCg -3'
miRNA:   3'- cuGUCCGC-CuuGUCCACG-CGC--AGGGG- -5'
5753 3' -59.3 NC_001806.1 + 83042 0.66 0.753449
Target:  5'- uGGCGaGCGucGCGGuGUGCGaagaGUCCCCc -3'
miRNA:   3'- -CUGUcCGCcuUGUC-CACGCg---CAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 76398 0.66 0.753449
Target:  5'- uGCGuGGCGGcGCuGGaGCGCGUggaccagagCCCCg -3'
miRNA:   3'- cUGU-CCGCCuUGuCCaCGCGCA---------GGGG- -5'
5753 3' -59.3 NC_001806.1 + 56684 0.66 0.753449
Target:  5'- -uCGGGgGGGACGGGgGCcCGggaaCCCCg -3'
miRNA:   3'- cuGUCCgCCUUGUCCaCGcGCa---GGGG- -5'
5753 3' -59.3 NC_001806.1 + 10394 0.66 0.753449
Target:  5'- gGGCGGGgGGAgGCGGGagccgGgGgGUCCCg -3'
miRNA:   3'- -CUGUCCgCCU-UGUCCa----CgCgCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 52868 0.67 0.744033
Target:  5'- cGACAGGCGaccGCcGGcgGCGaCGUgCCCCu -3'
miRNA:   3'- -CUGUCCGCcu-UGuCCa-CGC-GCA-GGGG- -5'
5753 3' -59.3 NC_001806.1 + 16646 0.67 0.744033
Target:  5'- cGAUAaG-GGGACcGGU-CGCGUCCCCg -3'
miRNA:   3'- -CUGUcCgCCUUGuCCAcGCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 112429 0.67 0.744033
Target:  5'- cGCGGGCGGccggucGACgGGGUGCuCGUCaCCa -3'
miRNA:   3'- cUGUCCGCC------UUG-UCCACGcGCAGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.