miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5754 3' -57.2 NC_001806.1 + 25905 0.66 0.865199
Target:  5'- gGCGGGCGGcgguCCGGGCgGcGUGcGCGCGc -3'
miRNA:   3'- gUGCCUGUU----GGUCCGaC-CAC-CGUGUc -5'
5754 3' -57.2 NC_001806.1 + 28305 0.66 0.864447
Target:  5'- aCACGGG-AGCCGGGCgccauguUGG-GGCGCc- -3'
miRNA:   3'- -GUGCCUgUUGGUCCG-------ACCaCCGUGuc -5'
5754 3' -57.2 NC_001806.1 + 121410 0.66 0.860658
Target:  5'- -cCGGGCGcgugcugcgccuuggGCCcggGGGcCUGGUGGCACc- -3'
miRNA:   3'- guGCCUGU---------------UGG---UCC-GACCACCGUGuc -5'
5754 3' -57.2 NC_001806.1 + 135569 0.66 0.85759
Target:  5'- uCACGGACucggccGCCAGGUcGGccgcgcgcugcUGGCGCu- -3'
miRNA:   3'- -GUGCCUGu-----UGGUCCGaCC-----------ACCGUGuc -5'
5754 3' -57.2 NC_001806.1 + 1545 0.66 0.85759
Target:  5'- cCGCGGcccGCGccACCGGGCcGGgccGGCGCGc -3'
miRNA:   3'- -GUGCC---UGU--UGGUCCGaCCa--CCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 134822 0.66 0.85759
Target:  5'- gGCGGuaAACCGcGGCUGGcggucgccgaccUGGCGCAc -3'
miRNA:   3'- gUGCCugUUGGU-CCGACC------------ACCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 42326 0.66 0.856043
Target:  5'- gGCGGGgGGCguGGggaaucgcguaGGUGGCGCAGa -3'
miRNA:   3'- gUGCCUgUUGguCCga---------CCACCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 132776 0.66 0.849776
Target:  5'- cCGCGGuGCGGg-AGGC-GGUGGCGCGGu -3'
miRNA:   3'- -GUGCC-UGUUggUCCGaCCACCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 2940 0.66 0.849776
Target:  5'- -cCGGGCGGCCGGGCcg--GGC-CGGg -3'
miRNA:   3'- guGCCUGUUGGUCCGaccaCCGuGUC- -5'
5754 3' -57.2 NC_001806.1 + 38525 0.66 0.849776
Target:  5'- -uCGGAUAugGCCucuGG-UGGUGGCGCAc -3'
miRNA:   3'- guGCCUGU--UGGu--CCgACCACCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 18493 0.66 0.844994
Target:  5'- cCGCaGACAGCCAgGGCUGGgagcccuccuggggGGUcCAGu -3'
miRNA:   3'- -GUGcCUGUUGGU-CCGACCa-------------CCGuGUC- -5'
5754 3' -57.2 NC_001806.1 + 151178 0.66 0.841767
Target:  5'- cCGCGGugAcGCgCAGGCggagGGcgaGGCGCGGc -3'
miRNA:   3'- -GUGCCugU-UG-GUCCGa---CCa--CCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 12793 0.66 0.838509
Target:  5'- cCGCGccGGCGAUCAGGCccauguuguucggGGUGGC-CGGg -3'
miRNA:   3'- -GUGC--CUGUUGGUCCGa------------CCACCGuGUC- -5'
5754 3' -57.2 NC_001806.1 + 140416 0.66 0.833567
Target:  5'- aCACGcGCGA-CGGGCagugagGGUGGCAUGGg -3'
miRNA:   3'- -GUGCcUGUUgGUCCGa-----CCACCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 62457 0.66 0.833567
Target:  5'- -gUGGACcagaaggcgGACCAGGgUGGaGGCugGGa -3'
miRNA:   3'- guGCCUG---------UUGGUCCgACCaCCGugUC- -5'
5754 3' -57.2 NC_001806.1 + 38075 0.66 0.825184
Target:  5'- cCGCGGGCAgGCUGGGCuuUGGUcGGUGgGGg -3'
miRNA:   3'- -GUGCCUGU-UGGUCCG--ACCA-CCGUgUC- -5'
5754 3' -57.2 NC_001806.1 + 146543 0.66 0.825184
Target:  5'- aCACGGAUu----GGCUGGUguagugGGCGCGGc -3'
miRNA:   3'- -GUGCCUGuugguCCGACCA------CCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 147779 0.66 0.825184
Target:  5'- aCGCGGGgGGCCcgGGGCgGGgGGCGgAGc -3'
miRNA:   3'- -GUGCCUgUUGG--UCCGaCCaCCGUgUC- -5'
5754 3' -57.2 NC_001806.1 + 37769 0.67 0.807902
Target:  5'- gGCGGGC-GCCuuucgcuccgGGGCcGG-GGCGCGGg -3'
miRNA:   3'- gUGCCUGuUGG----------UCCGaCCaCCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 61794 0.67 0.799018
Target:  5'- gCGCGGAUGGCCGGG-UGGUugauGGUACc- -3'
miRNA:   3'- -GUGCCUGUUGGUCCgACCA----CCGUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.