miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5754 5' -59.6 NC_001806.1 + 104524 0.65 0.778456
Target:  5'- cCCCACGGGauggggaaaaccacCACCAcgcaacugcugguGGCCCUggguucgcGCGACGa -3'
miRNA:   3'- cGGGUGCUC--------------GUGGU-------------CCGGGA--------CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 119469 0.66 0.772979
Target:  5'- aCCCGgucCGAGCgcggACCGGGCgugcggCCUGUGGCGu -3'
miRNA:   3'- cGGGU---GCUCG----UGGUCCG------GGACGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 4177 0.66 0.772979
Target:  5'- cGCCC-CGGGgGCgGgGGCCCgGCGcCGg -3'
miRNA:   3'- -CGGGuGCUCgUGgU-CCGGGaCGUuGC- -5'
5754 5' -59.6 NC_001806.1 + 120100 0.66 0.772979
Target:  5'- uGCCUcCGGGCccuggGCCAGGCCauccggGCcGCGc -3'
miRNA:   3'- -CGGGuGCUCG-----UGGUCCGGga----CGuUGC- -5'
5754 5' -59.6 NC_001806.1 + 105900 0.66 0.772979
Target:  5'- cGCgaCACGAaCACCGGGCgUCUGUGGCu -3'
miRNA:   3'- -CGg-GUGCUcGUGGUCCG-GGACGUUGc -5'
5754 5' -59.6 NC_001806.1 + 39207 0.66 0.763755
Target:  5'- cGUUCuuGGGgGCCGGGCCCcGCcGCa -3'
miRNA:   3'- -CGGGugCUCgUGGUCCGGGaCGuUGc -5'
5754 5' -59.6 NC_001806.1 + 54779 0.66 0.763755
Target:  5'- uGgCCGCGgcAGCACCAGggccaGCCCggugGCAuuGCGu -3'
miRNA:   3'- -CgGGUGC--UCGUGGUC-----CGGGa---CGU--UGC- -5'
5754 5' -59.6 NC_001806.1 + 60649 0.66 0.763755
Target:  5'- cCCCGCccGAGCucguCCAGGuCCCgaacgcGCAGCu -3'
miRNA:   3'- cGGGUG--CUCGu---GGUCC-GGGa-----CGUUGc -5'
5754 5' -59.6 NC_001806.1 + 2935 0.66 0.763755
Target:  5'- cGCCUcCGGGCgGCCGGGCCggGCcggGACu -3'
miRNA:   3'- -CGGGuGCUCG-UGGUCCGGgaCG---UUGc -5'
5754 5' -59.6 NC_001806.1 + 17039 0.66 0.758167
Target:  5'- uGCCaaccaACGAGCACCccgaacgacGGGCCCcgggguuuuaaggaGCGGCa -3'
miRNA:   3'- -CGGg----UGCUCGUGG---------UCCGGGa-------------CGUUGc -5'
5754 5' -59.6 NC_001806.1 + 50500 0.66 0.755358
Target:  5'- aGCCCcgcggucgugggggcCGAGCACgAGGCgCUggGCGACa -3'
miRNA:   3'- -CGGGu--------------GCUCGUGgUCCGgGA--CGUUGc -5'
5754 5' -59.6 NC_001806.1 + 135067 0.66 0.75442
Target:  5'- cCCCGCGGggacGCGCCGGGCCggaaaucgGCGcCGa -3'
miRNA:   3'- cGGGUGCU----CGUGGUCCGGga------CGUuGC- -5'
5754 5' -59.6 NC_001806.1 + 21179 0.66 0.75442
Target:  5'- aGCCCagaccgcgACGAGCGggGGGCCCUcGgGugGg -3'
miRNA:   3'- -CGGG--------UGCUCGUggUCCGGGA-CgUugC- -5'
5754 5' -59.6 NC_001806.1 + 44446 0.66 0.75442
Target:  5'- aGgCCGCGGGC-CCGGcGUCC-GCGugGa -3'
miRNA:   3'- -CgGGUGCUCGuGGUC-CGGGaCGUugC- -5'
5754 5' -59.6 NC_001806.1 + 49735 0.66 0.75442
Target:  5'- aGCCCugGGGCAUCcGGCCggGUuuuACc -3'
miRNA:   3'- -CGGGugCUCGUGGuCCGGgaCGu--UGc -5'
5754 5' -59.6 NC_001806.1 + 71343 0.66 0.75442
Target:  5'- gGCCUAUGGGCAC--GGCCCacGCcaGGCGg -3'
miRNA:   3'- -CGGGUGCUCGUGguCCGGGa-CG--UUGC- -5'
5754 5' -59.6 NC_001806.1 + 122833 0.66 0.75442
Target:  5'- cGCCCcuuuaguuGCGccGGCACCAGGCUauuaaacaGCAGCc -3'
miRNA:   3'- -CGGG--------UGC--UCGUGGUCCGGga------CGUUGc -5'
5754 5' -59.6 NC_001806.1 + 68575 0.66 0.75442
Target:  5'- gGCCUGC--GCACCGcggcGGCCCUGgGGCc -3'
miRNA:   3'- -CGGGUGcuCGUGGU----CCGGGACgUUGc -5'
5754 5' -59.6 NC_001806.1 + 23970 0.66 0.753481
Target:  5'- gGUCCGcCGAGCGCggCGGGCuguccugCCUGCuGGCGg -3'
miRNA:   3'- -CGGGU-GCUCGUG--GUCCG-------GGACG-UUGC- -5'
5754 5' -59.6 NC_001806.1 + 75423 0.66 0.744981
Target:  5'- cGUCCAgGuGCGCCGGGCCgc-CAACc -3'
miRNA:   3'- -CGGGUgCuCGUGGUCCGGgacGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.