miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5756 3' -52.4 NC_001806.1 + 14374 0.66 0.9874
Target:  5'- cCCCAGG------GGGCUGGgGUgagGGg -3'
miRNA:   3'- -GGGUCCuguuugUCCGACCgCAaa-CC- -5'
5756 3' -52.4 NC_001806.1 + 146078 0.66 0.9874
Target:  5'- gCCAGGucagucCGGGCGGGCaGGCGcucgcGGa -3'
miRNA:   3'- gGGUCCu-----GUUUGUCCGaCCGCaaa--CC- -5'
5756 3' -52.4 NC_001806.1 + 37953 0.66 0.985764
Target:  5'- cCCCGGGGCGGGguccccCAGGgUuGCGaUUGGu -3'
miRNA:   3'- -GGGUCCUGUUU------GUCCgAcCGCaAACC- -5'
5756 3' -52.4 NC_001806.1 + 76372 0.66 0.985764
Target:  5'- gCCCgagcgAGGACGcGCuGG-UGGCGUgcgUGGc -3'
miRNA:   3'- -GGG-----UCCUGUuUGuCCgACCGCAa--ACC- -5'
5756 3' -52.4 NC_001806.1 + 93353 0.66 0.985764
Target:  5'- aCCCAGcagcugcaGAUcgaGGACuGGCUGGCGcuccUGGa -3'
miRNA:   3'- -GGGUC--------CUG---UUUGuCCGACCGCaa--ACC- -5'
5756 3' -52.4 NC_001806.1 + 18936 0.66 0.985764
Target:  5'- aUCAGGugGcGCAGGCgguUGGCacugcgUGGg -3'
miRNA:   3'- gGGUCCugUuUGUCCG---ACCGcaa---ACC- -5'
5756 3' -52.4 NC_001806.1 + 25009 0.66 0.985764
Target:  5'- gCCGGGACG---GGGCggGGCGcUUGu -3'
miRNA:   3'- gGGUCCUGUuugUCCGa-CCGCaAACc -5'
5756 3' -52.4 NC_001806.1 + 37791 0.66 0.985764
Target:  5'- gCCGGGGCGcGgGGGUccgcgGGCGgggGGg -3'
miRNA:   3'- gGGUCCUGUuUgUCCGa----CCGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 43518 0.66 0.985764
Target:  5'- aUCAGGACAAgauGCGGcGCcUGGCGg---- -3'
miRNA:   3'- gGGUCCUGUU---UGUC-CG-ACCGCaaacc -5'
5756 3' -52.4 NC_001806.1 + 2657 0.66 0.98397
Target:  5'- cUCCAGGGCGGcggccGCGGGCgccgccGUGUggcUGGg -3'
miRNA:   3'- -GGGUCCUGUU-----UGUCCGac----CGCAa--ACC- -5'
5756 3' -52.4 NC_001806.1 + 12144 0.66 0.98397
Target:  5'- -aCAGGGCGAAUgccacGGCggGGCGacgUGGg -3'
miRNA:   3'- ggGUCCUGUUUGu----CCGa-CCGCaa-ACC- -5'
5756 3' -52.4 NC_001806.1 + 41994 0.66 0.983782
Target:  5'- gCCCAgGGGCGA--GGGCUGcuccgugcuggccGCGgggUUGGg -3'
miRNA:   3'- -GGGU-CCUGUUugUCCGAC-------------CGCa--AACC- -5'
5756 3' -52.4 NC_001806.1 + 3539 0.66 0.98201
Target:  5'- cCCgCGGGGgAGGCGGGCgcGGCGg---- -3'
miRNA:   3'- -GG-GUCCUgUUUGUCCGa-CCGCaaacc -5'
5756 3' -52.4 NC_001806.1 + 27699 0.66 0.980751
Target:  5'- cCCCGGGGCAccgacGCAGGCcaagccccuguugcgUcGGCGggagGGg -3'
miRNA:   3'- -GGGUCCUGUu----UGUCCG---------------A-CCGCaaa-CC- -5'
5756 3' -52.4 NC_001806.1 + 44943 0.66 0.979876
Target:  5'- gCCCGGGGCuGGCuAGcGCgggGGCGUg--- -3'
miRNA:   3'- -GGGUCCUGuUUG-UC-CGa--CCGCAaacc -5'
5756 3' -52.4 NC_001806.1 + 18442 0.66 0.979876
Target:  5'- cCCCAGaauCGGAUGGGCccgGGCGUUccacggagcUGGu -3'
miRNA:   3'- -GGGUCcu-GUUUGUCCGa--CCGCAA---------ACC- -5'
5756 3' -52.4 NC_001806.1 + 83803 0.66 0.979876
Target:  5'- uCCgGGGGCGAGgAGGg-GGCGg--GGu -3'
miRNA:   3'- -GGgUCCUGUUUgUCCgaCCGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 131074 0.66 0.977558
Target:  5'- aUCUGGGGCGAACuGuuUGGCGUgcagaUGGc -3'
miRNA:   3'- -GGGUCCUGUUUGuCcgACCGCAa----ACC- -5'
5756 3' -52.4 NC_001806.1 + 40536 0.66 0.977558
Target:  5'- uCCCGGGGgGAAgcgagauaggUGGGCggGGCGUgaaaaUGGa -3'
miRNA:   3'- -GGGUCCUgUUU----------GUCCGa-CCGCAa----ACC- -5'
5756 3' -52.4 NC_001806.1 + 100201 0.67 0.975049
Target:  5'- cCCCGGGAUAcuGAUGGGCga-CGUggGGa -3'
miRNA:   3'- -GGGUCCUGU--UUGUCCGaccGCAaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.