miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5756 5' -51.9 NC_001806.1 + 51263 0.66 0.991102
Target:  5'- aGCgCCGgACGCGcGGCGCGaGCuCCCUg -3'
miRNA:   3'- -UG-GGUaUGCGCaUUGUGCaUGuGGGG- -5'
5756 5' -51.9 NC_001806.1 + 113839 0.66 0.991102
Target:  5'- cGCCCugAUGCGgcGCGCG---GCCCUg -3'
miRNA:   3'- -UGGGuaUGCGCauUGUGCaugUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 4052 0.66 0.991102
Target:  5'- cGCCCAgcucggGCGCcc-ACACGgccgccgggGCGCCCg -3'
miRNA:   3'- -UGGGUa-----UGCGcauUGUGCa--------UGUGGGg -5'
5756 5' -51.9 NC_001806.1 + 1749 0.66 0.991102
Target:  5'- gGCCCGgcgguacucGCGCGggGACAUGgGCACCg- -3'
miRNA:   3'- -UGGGUa--------UGCGCa-UUGUGCaUGUGGgg -5'
5756 5' -51.9 NC_001806.1 + 77379 0.66 0.990861
Target:  5'- -gCCAgacggGCGCG-GGCGCGgcggccgcgcccGCGCCCCu -3'
miRNA:   3'- ugGGUa----UGCGCaUUGUGCa-----------UGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 7817 0.66 0.989847
Target:  5'- gGCCgccACGCGcGGCugGUccACACCCa -3'
miRNA:   3'- -UGGguaUGCGCaUUGugCA--UGUGGGg -5'
5756 5' -51.9 NC_001806.1 + 109657 0.66 0.989847
Target:  5'- cGCCCGcACGCGcAGCcCGgauauuaGCACaCCCg -3'
miRNA:   3'- -UGGGUaUGCGCaUUGuGCa------UGUG-GGG- -5'
5756 5' -51.9 NC_001806.1 + 137464 0.66 0.989847
Target:  5'- gGCCCAacUGgGacaGUAcC-CGUACACCCUg -3'
miRNA:   3'- -UGGGU--AUgCg--CAUuGuGCAUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 70478 0.66 0.989847
Target:  5'- cGCCUGUAUGCGgugguCGgggACACgCCCg -3'
miRNA:   3'- -UGGGUAUGCGCauuguGCa--UGUG-GGG- -5'
5756 5' -51.9 NC_001806.1 + 93128 0.66 0.989847
Target:  5'- aGCCUgAUGgGCGgcaaaAACGCGUGCccGCUCCu -3'
miRNA:   3'- -UGGG-UAUgCGCa----UUGUGCAUG--UGGGG- -5'
5756 5' -51.9 NC_001806.1 + 6715 0.66 0.989714
Target:  5'- gACaCCAUGCGgGUugggcccAGgACGUACGCCg- -3'
miRNA:   3'- -UG-GGUAUGCgCA-------UUgUGCAUGUGGgg -5'
5756 5' -51.9 NC_001806.1 + 42552 0.66 0.989714
Target:  5'- gACgUAUAgcgugguaaggcCGCGUugucccaGGgACGUGCGCCCCa -3'
miRNA:   3'- -UGgGUAU------------GCGCA-------UUgUGCAUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 119468 0.66 0.988457
Target:  5'- cACCCGguccgaGCGCGgaccGgGCGUGCGgCCUg -3'
miRNA:   3'- -UGGGUa-----UGCGCau--UgUGCAUGUgGGG- -5'
5756 5' -51.9 NC_001806.1 + 114357 0.66 0.988457
Target:  5'- cGCCCG-ACGCG-GGCGCcaACACCgCg -3'
miRNA:   3'- -UGGGUaUGCGCaUUGUGcaUGUGGgG- -5'
5756 5' -51.9 NC_001806.1 + 89011 0.66 0.988457
Target:  5'- gACCCG-ACGCGgagGACGuCGcGCucguCCCCc -3'
miRNA:   3'- -UGGGUaUGCGCa--UUGU-GCaUGu---GGGG- -5'
5756 5' -51.9 NC_001806.1 + 26961 0.66 0.988457
Target:  5'- cGCCCGccugGCGCGccgcGGCuCGUGgGCCCg -3'
miRNA:   3'- -UGGGUa---UGCGCa---UUGuGCAUgUGGGg -5'
5756 5' -51.9 NC_001806.1 + 146890 0.66 0.98831
Target:  5'- uCCCGUcUG-GUccaccagGAcCACGUACGCCCCg -3'
miRNA:   3'- uGGGUAuGCgCA-------UU-GUGCAUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 30885 0.66 0.988162
Target:  5'- uGCCCGgaagACGCGccACGCGgagACuuccggggccguCCCCg -3'
miRNA:   3'- -UGGGUa---UGCGCauUGUGCa--UGu-----------GGGG- -5'
5756 5' -51.9 NC_001806.1 + 50821 0.66 0.986924
Target:  5'- nCCC-UGCGCu--ACGCGUGCGuCCuCCg -3'
miRNA:   3'- uGGGuAUGCGcauUGUGCAUGU-GG-GG- -5'
5756 5' -51.9 NC_001806.1 + 40705 0.66 0.986924
Target:  5'- aGCgCAgGC-UGUGGCcguggGCGUACACCCCc -3'
miRNA:   3'- -UGgGUaUGcGCAUUG-----UGCAUGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.