miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5761 5' -56.6 NC_001806.1 + 99485 0.66 0.917856
Target:  5'- cGGCgCGGGcCGuGucaACGUCCACGUguGCUgCGc -3'
miRNA:   3'- -CCG-GUCC-GCuC---UGCAGGUGCA--UGA-GC- -5'
5761 5' -56.6 NC_001806.1 + 14564 0.66 0.917856
Target:  5'- aGGCCuGGCucAGACGUCCGuuggcCGU-UUCGg -3'
miRNA:   3'- -CCGGuCCGc-UCUGCAGGU-----GCAuGAGC- -5'
5761 5' -56.6 NC_001806.1 + 86039 0.66 0.917294
Target:  5'- gGGCCgcgggggGGGCGGGcuCGUCCccuggggcggcgGCGUcuaGCUCGc -3'
miRNA:   3'- -CCGG-------UCCGCUCu-GCAGG------------UGCA---UGAGC- -5'
5761 5' -56.6 NC_001806.1 + 92904 0.66 0.916163
Target:  5'- cGGCCgcgugguccgcgcaGGGCGGGGCGggCCugGagGC-CGg -3'
miRNA:   3'- -CCGG--------------UCCGCUCUGCa-GGugCa-UGaGC- -5'
5761 5' -56.6 NC_001806.1 + 16475 0.66 0.912132
Target:  5'- uGGCCAuGGuCGAGGgGggcuugccgCCGCGgcugaugGCUCGa -3'
miRNA:   3'- -CCGGU-CC-GCUCUgCa--------GGUGCa------UGAGC- -5'
5761 5' -56.6 NC_001806.1 + 113551 0.66 0.912132
Target:  5'- uGGCCcGGCucGugGUCCA-GUGCaUCa -3'
miRNA:   3'- -CCGGuCCGcuCugCAGGUgCAUG-AGc -5'
5761 5' -56.6 NC_001806.1 + 75221 0.66 0.900002
Target:  5'- cGGCCGuGCGGGcgcaccGCGUCCugGUcgACgCGg -3'
miRNA:   3'- -CCGGUcCGCUC------UGCAGGugCA--UGaGC- -5'
5761 5' -56.6 NC_001806.1 + 38284 0.66 0.893599
Target:  5'- cGCCGGGCGAGcgGCGUCgA-GUA-UCGg -3'
miRNA:   3'- cCGGUCCGCUC--UGCAGgUgCAUgAGC- -5'
5761 5' -56.6 NC_001806.1 + 125775 0.66 0.892947
Target:  5'- uGGCCgugguccucgaggAGGCGGGuAUGguggaCCGCGgACUCGg -3'
miRNA:   3'- -CCGG-------------UCCGCUC-UGCa----GGUGCaUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 4846 0.66 0.886976
Target:  5'- gGGUCGGGCGucgGGAuCGUCCggACGgcCUCc -3'
miRNA:   3'- -CCGGUCCGC---UCU-GCAGG--UGCauGAGc -5'
5761 5' -56.6 NC_001806.1 + 71103 0.66 0.886976
Target:  5'- cGGCCcccuGGGCcAGACGaCCGCGguuccggACUCc -3'
miRNA:   3'- -CCGG----UCCGcUCUGCaGGUGCa------UGAGc -5'
5761 5' -56.6 NC_001806.1 + 73303 0.66 0.886976
Target:  5'- uGGCCc-GCGAGGuCG-CCGCGUGUUCGc -3'
miRNA:   3'- -CCGGucCGCUCU-GCaGGUGCAUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 38632 0.66 0.886302
Target:  5'- cGGCCGGGUGguGGAUGUCCuuauaccCGUggugccggggccgGCUCu -3'
miRNA:   3'- -CCGGUCCGC--UCUGCAGGu------GCA-------------UGAGc -5'
5761 5' -56.6 NC_001806.1 + 116654 0.67 0.880136
Target:  5'- cGCUgcuGGCG-GACGUCCAacaACUCGg -3'
miRNA:   3'- cCGGu--CCGCuCUGCAGGUgcaUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 30385 0.67 0.880136
Target:  5'- uGCCGGGCGcgugcGACGguggCGCGcgGCUCGg -3'
miRNA:   3'- cCGGUCCGCu----CUGCag--GUGCa-UGAGC- -5'
5761 5' -56.6 NC_001806.1 + 61539 0.67 0.880136
Target:  5'- cGGUCGGGCGGGGgcUUgGCGUGCcCGc -3'
miRNA:   3'- -CCGGUCCGCUCUgcAGgUGCAUGaGC- -5'
5761 5' -56.6 NC_001806.1 + 20188 0.67 0.873083
Target:  5'- gGGCCGGcGCGGagucgggcacGGCG-CCA-GUGCUCGc -3'
miRNA:   3'- -CCGGUC-CGCU----------CUGCaGGUgCAUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 44131 0.67 0.873083
Target:  5'- cGCUcGGgGGGGCcUCCGCGUcaaACUCGu -3'
miRNA:   3'- cCGGuCCgCUCUGcAGGUGCA---UGAGC- -5'
5761 5' -56.6 NC_001806.1 + 84337 0.67 0.873083
Target:  5'- -uCCGGGCcuccGugGUCCGC-UACUCGg -3'
miRNA:   3'- ccGGUCCGcu--CugCAGGUGcAUGAGC- -5'
5761 5' -56.6 NC_001806.1 + 151554 0.67 0.865822
Target:  5'- cGGCCGGGgGcGGCGggggCCGCGaugGCggCGg -3'
miRNA:   3'- -CCGGUCCgCuCUGCa---GGUGCa--UGa-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.