miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5762 3' -63.6 NC_001806.1 + 119178 0.66 0.570771
Target:  5'- uCGCuCUGCUuGGCGcCGCCgcccCGCCGGCc -3'
miRNA:   3'- -GCG-GGCGGuCCGU-GCGGac--GCGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 120007 0.66 0.570771
Target:  5'- gCGCUCG--AGGUGCcCCUGCGCCAcccGCg -3'
miRNA:   3'- -GCGGGCggUCCGUGcGGACGCGGU---UG- -5'
5762 3' -63.6 NC_001806.1 + 84307 0.66 0.570771
Target:  5'- uGCgUGCUuacuGGCugGcCCUGCGCaGACu -3'
miRNA:   3'- gCGgGCGGu---CCGugC-GGACGCGgUUG- -5'
5762 3' -63.6 NC_001806.1 + 98486 0.66 0.570771
Target:  5'- aGCgCCGCaacCAGcuGCACGaCCUGCgcuucGCCGACa -3'
miRNA:   3'- gCG-GGCG---GUC--CGUGC-GGACG-----CGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 3279 0.66 0.570771
Target:  5'- aCGCgCGCaggcgGGGCGCGUCgGCGUgCGGCg -3'
miRNA:   3'- -GCGgGCGg----UCCGUGCGGaCGCG-GUUG- -5'
5762 3' -63.6 NC_001806.1 + 24321 0.66 0.570771
Target:  5'- uGCgCCGCaCGGuGCugGCCUcGgGCCGc- -3'
miRNA:   3'- gCG-GGCG-GUC-CGugCGGA-CgCGGUug -5'
5762 3' -63.6 NC_001806.1 + 96631 0.66 0.570771
Target:  5'- aCGCgaccgUCGCCgcGGGcCACGCCacccUGCGCgAGCa -3'
miRNA:   3'- -GCG-----GGCGG--UCC-GUGCGG----ACGCGgUUG- -5'
5762 3' -63.6 NC_001806.1 + 71356 0.66 0.569801
Target:  5'- gGCCCacGCCAGGCggaccgcgaggggGCGCCUcauuCCAACa -3'
miRNA:   3'- gCGGG--CGGUCCG-------------UGCGGAcgc-GGUUG- -5'
5762 3' -63.6 NC_001806.1 + 65463 0.66 0.569801
Target:  5'- gGCCC-CCGGGUccuggggGCGCCcGCGCaCcACg -3'
miRNA:   3'- gCGGGcGGUCCG-------UGCGGaCGCG-GuUG- -5'
5762 3' -63.6 NC_001806.1 + 24695 0.66 0.569801
Target:  5'- gGCCCgGCCcgguGGCGCggGCCgcggagggacuuuUGCGCCcGCg -3'
miRNA:   3'- gCGGG-CGGu---CCGUG--CGG-------------ACGCGGuUG- -5'
5762 3' -63.6 NC_001806.1 + 107397 0.66 0.564961
Target:  5'- gCGCCCGCCGGaGCcuucugauagccucgGC-CCUGUGuacguCCGACg -3'
miRNA:   3'- -GCGGGCGGUC-CG---------------UGcGGACGC-----GGUUG- -5'
5762 3' -63.6 NC_001806.1 + 136654 0.66 0.561096
Target:  5'- cCGCCUcCCGGGCGuuCCUGUaCCGGCg -3'
miRNA:   3'- -GCGGGcGGUCCGUgcGGACGcGGUUG- -5'
5762 3' -63.6 NC_001806.1 + 42978 0.66 0.561096
Target:  5'- gGCCCGUC-GGCACGgCCaucgugcguguaUGCGUCGuaGCu -3'
miRNA:   3'- gCGGGCGGuCCGUGC-GG------------ACGCGGU--UG- -5'
5762 3' -63.6 NC_001806.1 + 50796 0.66 0.561096
Target:  5'- gGCCC-CCgagguGGGCACGuacaccccCCUGCGCUAcGCg -3'
miRNA:   3'- gCGGGcGG-----UCCGUGC--------GGACGCGGU-UG- -5'
5762 3' -63.6 NC_001806.1 + 131868 0.66 0.561096
Target:  5'- aGgCCGUCGuGGCGgcCGCCcGCGCCGcgACg -3'
miRNA:   3'- gCgGGCGGU-CCGU--GCGGaCGCGGU--UG- -5'
5762 3' -63.6 NC_001806.1 + 3917 0.66 0.561096
Target:  5'- gCGCCCGagauCCGGaaGCAgGCCUG-GuCCAGCg -3'
miRNA:   3'- -GCGGGC----GGUC--CGUgCGGACgC-GGUUG- -5'
5762 3' -63.6 NC_001806.1 + 36829 0.66 0.561096
Target:  5'- cCGCCCacCCAGGCcguACGCC-GgGCCcACc -3'
miRNA:   3'- -GCGGGc-GGUCCG---UGCGGaCgCGGuUG- -5'
5762 3' -63.6 NC_001806.1 + 70921 0.66 0.561096
Target:  5'- gGCCUGCagaCGGaGCGCGCCguggucgugGCGCCc-- -3'
miRNA:   3'- gCGGGCG---GUC-CGUGCGGa--------CGCGGuug -5'
5762 3' -63.6 NC_001806.1 + 81542 0.66 0.561096
Target:  5'- aGCCCGC---GCAUGCCaaGCGCCcgGACg -3'
miRNA:   3'- gCGGGCGgucCGUGCGGa-CGCGG--UUG- -5'
5762 3' -63.6 NC_001806.1 + 3694 0.66 0.561096
Target:  5'- -cCCCGUCAGcGC-CGCgUucucgcGCGCCAACa -3'
miRNA:   3'- gcGGGCGGUC-CGuGCGgA------CGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.