miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5762 5' -58.8 NC_001806.1 + 96613 0.65 0.806618
Target:  5'- cGCGCCC-CGCCGGCGacaacgcgaccgucGCCgCGG-GCc -3'
miRNA:   3'- -UGCGGGuGUGGCUGU--------------UGGgGUCaCGu -5'
5762 5' -58.8 NC_001806.1 + 147155 0.66 0.800479
Target:  5'- cCuCCCaggGCACCGACGGCCCCgcccgAGgagGCGg -3'
miRNA:   3'- uGcGGG---UGUGGCUGUUGGGG-----UCa--CGU- -5'
5762 5' -58.8 NC_001806.1 + 40164 0.66 0.800479
Target:  5'- aAUGUCCGCGCCGugGcgcgacucGCCCgGccGUGCu -3'
miRNA:   3'- -UGCGGGUGUGGCugU--------UGGGgU--CACGu -5'
5762 5' -58.8 NC_001806.1 + 102582 0.66 0.800479
Target:  5'- cGCGgUCGCuaucgUCGGCGGCCCC-GUGCGu -3'
miRNA:   3'- -UGCgGGUGu----GGCUGUUGGGGuCACGU- -5'
5762 5' -58.8 NC_001806.1 + 45663 0.66 0.800479
Target:  5'- cCGCCCACAgaGggccacucacGCAuCCCCAGUGgGu -3'
miRNA:   3'- uGCGGGUGUggC----------UGUuGGGGUCACgU- -5'
5762 5' -58.8 NC_001806.1 + 27500 0.66 0.800479
Target:  5'- -gGCCCuuaAUgGGCAACCCCGGUa-- -3'
miRNA:   3'- ugCGGGug-UGgCUGUUGGGGUCAcgu -5'
5762 5' -58.8 NC_001806.1 + 1361 0.66 0.795158
Target:  5'- cCGCCCccaGCACCuccACGGCCCCcgccgccgccagcacGGUGCc -3'
miRNA:   3'- uGCGGG---UGUGGc--UGUUGGGG---------------UCACGu -5'
5762 5' -58.8 NC_001806.1 + 125580 0.66 0.795158
Target:  5'- cACGCCCGCGacccggacgccgaucCCGACu-CCCCGGa--- -3'
miRNA:   3'- -UGCGGGUGU---------------GGCUGuuGGGGUCacgu -5'
5762 5' -58.8 NC_001806.1 + 83713 0.66 0.791583
Target:  5'- uCGCCCuCcCCGGgAGCCgCCaaGGUGCAg -3'
miRNA:   3'- uGCGGGuGuGGCUgUUGG-GG--UCACGU- -5'
5762 5' -58.8 NC_001806.1 + 3595 0.66 0.791583
Target:  5'- gGCGCCgUAC-CCGGCGGgcaccgcgcgcuCgCCCGGUGCGg -3'
miRNA:   3'- -UGCGG-GUGuGGCUGUU------------G-GGGUCACGU- -5'
5762 5' -58.8 NC_001806.1 + 24251 0.66 0.791583
Target:  5'- cACGCCUAC-CUGGCGugcgagcugcuGCCCgCcGUGCAg -3'
miRNA:   3'- -UGCGGGUGuGGCUGU-----------UGGG-GuCACGU- -5'
5762 5' -58.8 NC_001806.1 + 63355 0.66 0.791583
Target:  5'- -aGgCCGgAUgGACGAUCUCGGUGCAg -3'
miRNA:   3'- ugCgGGUgUGgCUGUUGGGGUCACGU- -5'
5762 5' -58.8 NC_001806.1 + 83677 0.66 0.791583
Target:  5'- gUGCCCGgG-CGGCAugCCCAGaaGCAa -3'
miRNA:   3'- uGCGGGUgUgGCUGUugGGGUCa-CGU- -5'
5762 5' -58.8 NC_001806.1 + 137621 0.66 0.791583
Target:  5'- cGCGCCCugGCCGcCcuggaacgGACCCUGGgguugGCc -3'
miRNA:   3'- -UGCGGGugUGGCuG--------UUGGGGUCa----CGu -5'
5762 5' -58.8 NC_001806.1 + 70158 0.66 0.791583
Target:  5'- cCGCCCGgGgCGGCcucGGCCCCAcuaUGCAg -3'
miRNA:   3'- uGCGGGUgUgGCUG---UUGGGGUc--ACGU- -5'
5762 5' -58.8 NC_001806.1 + 105156 0.66 0.791583
Target:  5'- cCGCCCcagggUGCCGA--GCCCCAGaGCAa -3'
miRNA:   3'- uGCGGGu----GUGGCUguUGGGGUCaCGU- -5'
5762 5' -58.8 NC_001806.1 + 107396 0.66 0.791583
Target:  5'- cGCGCCCGCcggagccuuCUGAUAGCCUCGGcccUGUg -3'
miRNA:   3'- -UGCGGGUGu--------GGCUGUUGGGGUC---ACGu -5'
5762 5' -58.8 NC_001806.1 + 86319 0.66 0.782547
Target:  5'- gGCGUCUACGagGACGGCCCCGaacgccUGCAg -3'
miRNA:   3'- -UGCGGGUGUggCUGUUGGGGUc-----ACGU- -5'
5762 5' -58.8 NC_001806.1 + 5045 0.66 0.782547
Target:  5'- cGCGcCCCAC-CCGAgGGCCCCcc-GCu -3'
miRNA:   3'- -UGC-GGGUGuGGCUgUUGGGGucaCGu -5'
5762 5' -58.8 NC_001806.1 + 26808 0.66 0.77338
Target:  5'- cGCGCCUGCGCCuGCGACgCgCGG-GCGg -3'
miRNA:   3'- -UGCGGGUGUGGcUGUUG-GgGUCaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.