miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5763 3' -60.2 NC_001806.1 + 34402 0.66 0.778578
Target:  5'- cGGCGGUgGCCgGGccgGGCcgGGCCGGg -3'
miRNA:   3'- -CCGCCAgCGGgUCaagCCG--CUGGCUg -5'
5763 3' -60.2 NC_001806.1 + 101003 0.66 0.778578
Target:  5'- aGGCGcUCcuCCCGGgagagCGGCGGCCcGCg -3'
miRNA:   3'- -CCGCcAGc-GGGUCaa---GCCGCUGGcUG- -5'
5763 3' -60.2 NC_001806.1 + 54275 0.66 0.778578
Target:  5'- uGGCGGcuuuauagCGCCCAG--CGGUGGgCGGg -3'
miRNA:   3'- -CCGCCa-------GCGGGUCaaGCCGCUgGCUg -5'
5763 3' -60.2 NC_001806.1 + 1418 0.66 0.77679
Target:  5'- uGGCcGagGCCCAGcgaaucccgggCGGCG-CCGGCg -3'
miRNA:   3'- -CCGcCagCGGGUCaa---------GCCGCuGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 90903 0.66 0.769591
Target:  5'- cGCGGcCGCCCAcc-UGGCGuuUGACg -3'
miRNA:   3'- cCGCCaGCGGGUcaaGCCGCugGCUG- -5'
5763 3' -60.2 NC_001806.1 + 144967 0.66 0.769591
Target:  5'- uGGCGGcCcgGCCCGGggcccCGGCGGacccaaggggccCCGGCc -3'
miRNA:   3'- -CCGCCaG--CGGGUCaa---GCCGCU------------GGCUG- -5'
5763 3' -60.2 NC_001806.1 + 95045 0.66 0.769591
Target:  5'- cGCGGUgGCCguggaacuggcgCuGUUCgGGCGGCgGGCg -3'
miRNA:   3'- cCGCCAgCGG------------GuCAAG-CCGCUGgCUG- -5'
5763 3' -60.2 NC_001806.1 + 23967 0.66 0.768685
Target:  5'- aGUGGUcCGCCgAGcgCGGCGggcuguccugccuGCUGGCg -3'
miRNA:   3'- cCGCCA-GCGGgUCaaGCCGC-------------UGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 1615 0.66 0.764144
Target:  5'- aGCGGcgCGCCCAGgcCccagcgcgcgcaggcGGCGugCGAg -3'
miRNA:   3'- cCGCCa-GCGGGUCaaG---------------CCGCugGCUg -5'
5763 3' -60.2 NC_001806.1 + 75586 0.66 0.761405
Target:  5'- aGCGGgcgCGCCCugcaggagcugggaaAGgucaUCGGCGccacgcgacgccgcGCCGACg -3'
miRNA:   3'- cCGCCa--GCGGG---------------UCa---AGCCGC--------------UGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 25904 0.66 0.76049
Target:  5'- aGGCGGgcggCgGUCCGGg-CGGCGugCGcGCg -3'
miRNA:   3'- -CCGCCa---G-CGGGUCaaGCCGCugGC-UG- -5'
5763 3' -60.2 NC_001806.1 + 151531 0.66 0.76049
Target:  5'- gGGaCGG-CGCCCGuGggCccgGGCGGCCGGg -3'
miRNA:   3'- -CC-GCCaGCGGGU-CaaG---CCGCUGGCUg -5'
5763 3' -60.2 NC_001806.1 + 53 0.66 0.76049
Target:  5'- uGGgGGggGCCCGuuUUCGGCGuCUGGCc -3'
miRNA:   3'- -CCgCCagCGGGUc-AAGCCGCuGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 151763 0.66 0.76049
Target:  5'- uGGgGGggGCCCGuuUUCGGCGuCUGGCc -3'
miRNA:   3'- -CCgCCagCGGGUc-AAGCCGCuGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 86822 0.66 0.751285
Target:  5'- cGCGGUCGCgagCAGcaucUC-GCGGCCGAUg -3'
miRNA:   3'- cCGCCAGCGg--GUCa---AGcCGCUGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 23581 0.66 0.751285
Target:  5'- cGGCGG-CGCCCg---CGGCcGCCGcCc -3'
miRNA:   3'- -CCGCCaGCGGGucaaGCCGcUGGCuG- -5'
5763 3' -60.2 NC_001806.1 + 57164 0.66 0.751285
Target:  5'- aGGgGGUgcgcgcauaaaGCCCAGcaCGGCGcacCCGACg -3'
miRNA:   3'- -CCgCCAg----------CGGGUCaaGCCGCu--GGCUG- -5'
5763 3' -60.2 NC_001806.1 + 76310 0.66 0.741982
Target:  5'- cGCGGUgcgcaaCGaCCCGG--CGGCGGCCGcCg -3'
miRNA:   3'- cCGCCA------GC-GGGUCaaGCCGCUGGCuG- -5'
5763 3' -60.2 NC_001806.1 + 21287 0.66 0.741982
Target:  5'- cGGCGGgacgggaggGCCCccg-CGGCGggcACCGACg -3'
miRNA:   3'- -CCGCCag-------CGGGucaaGCCGC---UGGCUG- -5'
5763 3' -60.2 NC_001806.1 + 91897 0.66 0.741982
Target:  5'- aGGCGGUC-CCCAcGgccauggGGCGGCUGGa -3'
miRNA:   3'- -CCGCCAGcGGGU-Caag----CCGCUGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.