miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5763 5' -54.7 NC_001806.1 + 135070 0.66 0.957297
Target:  5'- cGcgGGGacGCGCCggGCCGGAAauCGGc -3'
miRNA:   3'- cCuaCCC--CGCGGaaUGGUCUUcuGCC- -5'
5763 5' -54.7 NC_001806.1 + 145261 0.66 0.957297
Target:  5'- ---gGGGGCGCC---CCAGAGGcuaagguCGGc -3'
miRNA:   3'- ccuaCCCCGCGGaauGGUCUUCu------GCC- -5'
5763 5' -54.7 NC_001806.1 + 45307 0.66 0.957297
Target:  5'- ---cGGGGagcCGCCcgGCgaGGAGGGCGGg -3'
miRNA:   3'- ccuaCCCC---GCGGaaUGg-UCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 143335 0.66 0.957297
Target:  5'- gGGggGGGGCGCUgguugguCaaaaaAGGgagGGACGGg -3'
miRNA:   3'- -CCuaCCCCGCGGaau----Gg----UCU---UCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 4124 0.66 0.957297
Target:  5'- ----cGGGCGCCcc-CCAGAggcccGGGCGGc -3'
miRNA:   3'- ccuacCCCGCGGaauGGUCU-----UCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 100315 0.66 0.957297
Target:  5'- gGGGuUGGGGCGCggcaugGCCGGc-GACGa -3'
miRNA:   3'- -CCU-ACCCCGCGgaa---UGGUCuuCUGCc -5'
5763 5' -54.7 NC_001806.1 + 126848 0.66 0.957297
Target:  5'- cGGAgGaGGGCGUaacguuccGCCuGGAGGACGGc -3'
miRNA:   3'- -CCUaC-CCCGCGgaa-----UGG-UCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 91523 0.66 0.955015
Target:  5'- uGGAgcgcUGcgacGGCGCCgugaucgucgggcGCCAGGAGAUGGa -3'
miRNA:   3'- -CCU----ACc---CCGCGGaa-----------UGGUCUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 86387 0.66 0.953844
Target:  5'- ---cGGGGCGCUcggcuaacgcggcgGCCGcuccGGAGACGGu -3'
miRNA:   3'- ccuaCCCCGCGGaa------------UGGU----CUUCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 20714 0.66 0.953449
Target:  5'- gGGGUGGGccCGCCg----GGggGGCGGg -3'
miRNA:   3'- -CCUACCCc-GCGGaauggUCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 24873 0.66 0.953449
Target:  5'- cGGcgGcGGGgGCCguggaggUGCU-GggGGCGGa -3'
miRNA:   3'- -CCuaC-CCCgCGGa------AUGGuCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 151576 0.66 0.949373
Target:  5'- cGAUGGcGGCGgCggcggGCCAuGGAGACa- -3'
miRNA:   3'- cCUACC-CCGCgGaa---UGGU-CUUCUGcc -5'
5763 5' -54.7 NC_001806.1 + 13634 0.66 0.949373
Target:  5'- uGGAUGuGGuacacGCGCCggacccCCGGAGGGuCGGu -3'
miRNA:   3'- -CCUAC-CC-----CGCGGaau---GGUCUUCU-GCC- -5'
5763 5' -54.7 NC_001806.1 + 111197 0.66 0.948953
Target:  5'- cGGGcccUGGGGauaGCCUgcgcgGCCGGGGccucgauguggguGGCGGc -3'
miRNA:   3'- -CCU---ACCCCg--CGGAa----UGGUCUU-------------CUGCC- -5'
5763 5' -54.7 NC_001806.1 + 4185 0.66 0.945066
Target:  5'- gGGcgGGGGC-CCggcGCCGGGccACGGc -3'
miRNA:   3'- -CCuaCCCCGcGGaa-UGGUCUucUGCC- -5'
5763 5' -54.7 NC_001806.1 + 4288 0.66 0.945066
Target:  5'- ---cGGGGCuGCCcgGCCGuGAAG-CGGc -3'
miRNA:   3'- ccuaCCCCG-CGGaaUGGU-CUUCuGCC- -5'
5763 5' -54.7 NC_001806.1 + 143815 0.66 0.945066
Target:  5'- gGGAgGGGGUGa-----CGGggGACGGg -3'
miRNA:   3'- -CCUaCCCCGCggaaugGUCuuCUGCC- -5'
5763 5' -54.7 NC_001806.1 + 148776 0.66 0.945066
Target:  5'- aGGG-GGGGCGCCcccgcaacUGCCGGGgucuuccucgcGGGgGGg -3'
miRNA:   3'- -CCUaCCCCGCGGa-------AUGGUCU-----------UCUgCC- -5'
5763 5' -54.7 NC_001806.1 + 137005 0.66 0.945066
Target:  5'- cGGcgGGGaGCGCCa-GCUAGAcGGACa- -3'
miRNA:   3'- -CCuaCCC-CGCGGaaUGGUCU-UCUGcc -5'
5763 5' -54.7 NC_001806.1 + 10695 0.66 0.944623
Target:  5'- aGAUGGGGCcgggggggcguacGCCaucGCCAGcGGGACcGGa -3'
miRNA:   3'- cCUACCCCG-------------CGGaa-UGGUC-UUCUG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.