miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5765 3' -57.9 NC_001806.1 + 67038 0.66 0.865974
Target:  5'- -gUGGGCCcguACCGcaucGGcGGCGUCGCgCg -3'
miRNA:   3'- agGCCCGGu--UGGU----UCuCUGCAGCGgG- -5'
5765 3' -57.9 NC_001806.1 + 67429 0.66 0.865974
Target:  5'- --gGGGUCAGcgccCCAGGGGGCG-CGUCUg -3'
miRNA:   3'- aggCCCGGUU----GGUUCUCUGCaGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 76588 0.66 0.865974
Target:  5'- gCCGGGCCcagcucgaGGCCGAGGGuC-UgGCCa -3'
miRNA:   3'- aGGCCCGG--------UUGGUUCUCuGcAgCGGg -5'
5765 3' -57.9 NC_001806.1 + 90161 0.66 0.865974
Target:  5'- cCCGGGCCc-CUggGAuACGUguaCGCUCg -3'
miRNA:   3'- aGGCCCGGuuGGuuCUcUGCA---GCGGG- -5'
5765 3' -57.9 NC_001806.1 + 2318 0.66 0.865974
Target:  5'- cCCGccGCCGGCCAGGu--CcUCGCCCg -3'
miRNA:   3'- aGGCc-CGGUUGGUUCucuGcAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 11328 0.66 0.865974
Target:  5'- gUgGGGUCca-CGGGGGGCGUCggaaGCCCa -3'
miRNA:   3'- aGgCCCGGuugGUUCUCUGCAG----CGGG- -5'
5765 3' -57.9 NC_001806.1 + 78595 0.66 0.865974
Target:  5'- -aCGGGCCAGC------ACGUCGCCg -3'
miRNA:   3'- agGCCCGGUUGguucucUGCAGCGGg -5'
5765 3' -57.9 NC_001806.1 + 107484 0.66 0.865974
Target:  5'- cCCGGGCCGACCAccAGAaaa--CCCu -3'
miRNA:   3'- aGGCCCGGUUGGUucUCUgcagcGGG- -5'
5765 3' -57.9 NC_001806.1 + 141433 0.66 0.865974
Target:  5'- -gCGcGGCCAACCGGcGGAUaacucCGCCCa -3'
miRNA:   3'- agGC-CCGGUUGGUUcUCUGca---GCGGG- -5'
5765 3' -57.9 NC_001806.1 + 75568 0.66 0.865974
Target:  5'- gCCGGGgaCCAcucccCCAGcGGGCG-CGCCCu -3'
miRNA:   3'- aGGCCC--GGUu----GGUUcUCUGCaGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 84074 0.66 0.863027
Target:  5'- gUCgGGGCCccagcugcgcgcuGCCGcGGAGGCccGUCGCgCCa -3'
miRNA:   3'- -AGgCCCGGu------------UGGU-UCUCUG--CAGCG-GG- -5'
5765 3' -57.9 NC_001806.1 + 115213 0.66 0.858546
Target:  5'- uUCCGccGGCCcugcAACCcccGGGGACG-CGCCg -3'
miRNA:   3'- -AGGC--CCGG----UUGGu--UCUCUGCaGCGGg -5'
5765 3' -57.9 NC_001806.1 + 23727 0.66 0.858546
Target:  5'- gCCGGGCCcGCCcc----CGcCGCCCa -3'
miRNA:   3'- aGGCCCGGuUGGuucucuGCaGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 113401 0.66 0.858546
Target:  5'- cCCgGGGCCuggAGCUggGGGugGgaCGCCa -3'
miRNA:   3'- aGG-CCCGG---UUGGuuCUCugCa-GCGGg -5'
5765 3' -57.9 NC_001806.1 + 130470 0.66 0.858546
Target:  5'- gCCGGGau--CCc-GAGGCGUCGCUg -3'
miRNA:   3'- aGGCCCgguuGGuuCUCUGCAGCGGg -5'
5765 3' -57.9 NC_001806.1 + 20323 0.66 0.858546
Target:  5'- cCCGccGGCCAAUgGGGGGGCGgcaaggcgggCgGCCCu -3'
miRNA:   3'- aGGC--CCGGUUGgUUCUCUGCa---------G-CGGG- -5'
5765 3' -57.9 NC_001806.1 + 114743 0.66 0.858546
Target:  5'- -aCGGGCCu-CCAucccGGGuuuggguucACGUCGUCCg -3'
miRNA:   3'- agGCCCGGuuGGUu---CUC---------UGCAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 2422 0.66 0.856279
Target:  5'- -gCGGGCCcgaggcgcgcagggGGCCaAAGAGGCG--GCCCc -3'
miRNA:   3'- agGCCCGG--------------UUGG-UUCUCUGCagCGGG- -5'
5765 3' -57.9 NC_001806.1 + 59202 0.66 0.853995
Target:  5'- gUgGGGUuuugauggCAGCCAGGGGAcccaagcaaccggacCGUCGCUCa -3'
miRNA:   3'- aGgCCCG--------GUUGGUUCUCU---------------GCAGCGGG- -5'
5765 3' -57.9 NC_001806.1 + 89600 0.66 0.850922
Target:  5'- gCCGGcgGCCGACaggaGAGuGACGUaGCCg -3'
miRNA:   3'- aGGCC--CGGUUGg---UUCuCUGCAgCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.