miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5766 3' -60.2 NC_001806.1 + 25859 0.66 0.757488
Target:  5'- cCUGuGGCAGcccggGCCCCCCgcgGGCGc- -3'
miRNA:   3'- -GGC-CCGUUcaua-CGGGGGGa--CCGCuc -5'
5766 3' -60.2 NC_001806.1 + 2809 0.66 0.757488
Target:  5'- gCUGGGCGGGggcggGCUcgggCCCCgggGGCGuGg -3'
miRNA:   3'- -GGCCCGUUCaua--CGG----GGGGa--CCGCuC- -5'
5766 3' -60.2 NC_001806.1 + 91402 0.66 0.75656
Target:  5'- cCCGGGUucgaGGGUcgGCCcaccgcgCCCCUcgucGGCGGa -3'
miRNA:   3'- -GGCCCG----UUCAuaCGG-------GGGGA----CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 135867 0.66 0.748167
Target:  5'- gCCgGGGCGucuaucagGUGCCCCCC-GGCcucgucGAGg -3'
miRNA:   3'- -GG-CCCGUuca-----UACGGGGGGaCCG------CUC- -5'
5766 3' -60.2 NC_001806.1 + 50783 0.66 0.748167
Target:  5'- aCGGGgGAuucacgGCCCCCgaGGUGGGc -3'
miRNA:   3'- gGCCCgUUcaua--CGGGGGgaCCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 150585 0.66 0.748167
Target:  5'- aCCGGG-AAGUGggcgGCCCggCCCauugGGCGGu -3'
miRNA:   3'- -GGCCCgUUCAUa---CGGG--GGGa---CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 26928 0.66 0.747229
Target:  5'- uCCGGGUGcgccaccuGGUGUcugggccucggccGCCCgCCUGGCGc- -3'
miRNA:   3'- -GGCCCGU--------UCAUA-------------CGGGgGGACCGCuc -5'
5766 3' -60.2 NC_001806.1 + 28136 0.66 0.739695
Target:  5'- cCCGGaGCGAGUAcccgccggccugaggGCCgCCCCcagcGCGAGg -3'
miRNA:   3'- -GGCC-CGUUCAUa--------------CGG-GGGGac--CGCUC- -5'
5766 3' -60.2 NC_001806.1 + 17159 0.66 0.738749
Target:  5'- gCCGGucgcucCAAGg--GCCCCCCcgggaaGGCGGGu -3'
miRNA:   3'- -GGCCc-----GUUCauaCGGGGGGa-----CCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 24908 0.66 0.738749
Target:  5'- gCGGGCuuGGccacGCCCCCgC-GGCGGGa -3'
miRNA:   3'- gGCCCGu-UCaua-CGGGGG-GaCCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 31327 0.66 0.738749
Target:  5'- cCCGGGaCGAGggaaaacaauaagggAcGCCCCCCguguuugUGGgGAGg -3'
miRNA:   3'- -GGCCC-GUUCa--------------UaCGGGGGG-------ACCgCUC- -5'
5766 3' -60.2 NC_001806.1 + 32645 0.66 0.738749
Target:  5'- aCGGGCuGGUGUgcuguaacacgaGCCCaCCCgcgagUGGCGuGg -3'
miRNA:   3'- gGCCCGuUCAUA------------CGGG-GGG-----ACCGCuC- -5'
5766 3' -60.2 NC_001806.1 + 147020 0.66 0.738749
Target:  5'- aUGGGCAGGUAgcgcgugagGCCgCCC--GCGGGg -3'
miRNA:   3'- gGCCCGUUCAUa--------CGGgGGGacCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 127749 0.66 0.729245
Target:  5'- cCCGGGCGGGc-UGCCgggugcgggCCUgUGGCGGc -3'
miRNA:   3'- -GGCCCGUUCauACGG---------GGGgACCGCUc -5'
5766 3' -60.2 NC_001806.1 + 100104 0.66 0.729245
Target:  5'- cCCGcGGCcGGcugaccGCCCgCCUGGCGGu -3'
miRNA:   3'- -GGC-CCGuUCaua---CGGGgGGACCGCUc -5'
5766 3' -60.2 NC_001806.1 + 77451 0.66 0.729245
Target:  5'- cCCGGGC--GUccGCCCCaCCcGGCcaaGAGg -3'
miRNA:   3'- -GGCCCGuuCAuaCGGGG-GGaCCG---CUC- -5'
5766 3' -60.2 NC_001806.1 + 30423 0.66 0.719661
Target:  5'- gCCGGGCGuggagGGUGggcacggGCCCUCCcgcGGCGc- -3'
miRNA:   3'- -GGCCCGU-----UCAUa------CGGGGGGa--CCGCuc -5'
5766 3' -60.2 NC_001806.1 + 45301 0.66 0.719661
Target:  5'- cCCGcGCGGGga-GCCgCCC-GGCGAGg -3'
miRNA:   3'- -GGCcCGUUCauaCGGgGGGaCCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 55886 0.66 0.719661
Target:  5'- cCCGGGCc---AUGCccgacgccuCCCCCUcGCGAGg -3'
miRNA:   3'- -GGCCCGuucaUACG---------GGGGGAcCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 27864 0.66 0.719661
Target:  5'- cCCGcGGUggGccUGCCuCCCCUGG-GAc -3'
miRNA:   3'- -GGC-CCGuuCauACGG-GGGGACCgCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.