miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5766 5' -53.3 NC_001806.1 + 115654 0.66 0.973393
Target:  5'- -gCCCGCAACggGGAaGCccACGCgCGg -3'
miRNA:   3'- agGGGUGUUGuaCCU-CGuaUGCGaGC- -5'
5766 5' -53.3 NC_001806.1 + 9791 0.66 0.973393
Target:  5'- -gCCC-CGACGUGcGGGUggGUGgGCUCGg -3'
miRNA:   3'- agGGGuGUUGUAC-CUCG--UAUgCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 2831 0.66 0.973393
Target:  5'- cCCCgGgGGCGUGGAGgGggGCGCgggcgCGg -3'
miRNA:   3'- aGGGgUgUUGUACCUCgUa-UGCGa----GC- -5'
5766 5' -53.3 NC_001806.1 + 4652 0.66 0.973393
Target:  5'- gUCUCCGCGGCGgcUGGgccGGCGgGCGCggCGa -3'
miRNA:   3'- -AGGGGUGUUGU--ACC---UCGUaUGCGa-GC- -5'
5766 5' -53.3 NC_001806.1 + 127793 0.66 0.970551
Target:  5'- -aUCCGC-GCAUGGAacuGCGUacGCGCUUGa -3'
miRNA:   3'- agGGGUGuUGUACCU---CGUA--UGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 64131 0.66 0.967497
Target:  5'- gCCCCaggGCGAUGUGGcGCAUGcCGCgCGu -3'
miRNA:   3'- aGGGG---UGUUGUACCuCGUAU-GCGaGC- -5'
5766 5' -53.3 NC_001806.1 + 138807 0.66 0.967497
Target:  5'- gCCCC-CGGC---GAGCGUGCGUUUGa -3'
miRNA:   3'- aGGGGuGUUGuacCUCGUAUGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 77702 0.66 0.967497
Target:  5'- cCCCCGCuuccgacgGACAcccUGGAGUcgGC-CUCGa -3'
miRNA:   3'- aGGGGUG--------UUGU---ACCUCGuaUGcGAGC- -5'
5766 5' -53.3 NC_001806.1 + 119969 0.66 0.964225
Target:  5'- cUCCCgCugGGCAggcGGAGCugcugcUACGCUUu -3'
miRNA:   3'- -AGGG-GugUUGUa--CCUCGu-----AUGCGAGc -5'
5766 5' -53.3 NC_001806.1 + 84839 0.66 0.964225
Target:  5'- gCCCuauCACGGCAaGGAGCGccgGCGgUCGc -3'
miRNA:   3'- aGGG---GUGUUGUaCCUCGUa--UGCgAGC- -5'
5766 5' -53.3 NC_001806.1 + 71809 0.66 0.963886
Target:  5'- gCCCgACcuggAGCcgGGGgggucgguaucguGCAUGCGCUCGu -3'
miRNA:   3'- aGGGgUG----UUGuaCCU-------------CGUAUGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 116352 0.66 0.96073
Target:  5'- cCCCCugGACGUGG-GCcucacccACGC-CGg -3'
miRNA:   3'- aGGGGugUUGUACCuCGua-----UGCGaGC- -5'
5766 5' -53.3 NC_001806.1 + 55332 0.66 0.96073
Target:  5'- gUCCCC-CGG-GUGGGGCGgugAUGUUCGu -3'
miRNA:   3'- -AGGGGuGUUgUACCUCGUa--UGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 55965 0.66 0.960004
Target:  5'- cCUCCAC-ACGgaccaccggaugGGGGUGUGCGUUCGa -3'
miRNA:   3'- aGGGGUGuUGUa-----------CCUCGUAUGCGAGC- -5'
5766 5' -53.3 NC_001806.1 + 47838 0.66 0.957006
Target:  5'- -aCCCGCGAgauccUAUGGGccGCGUACGC-CGa -3'
miRNA:   3'- agGGGUGUU-----GUACCU--CGUAUGCGaGC- -5'
5766 5' -53.3 NC_001806.1 + 28294 0.67 0.953047
Target:  5'- cCCCCACucauACAcgGGAGCcggGCGC-Ca -3'
miRNA:   3'- aGGGGUGu---UGUa-CCUCGua-UGCGaGc -5'
5766 5' -53.3 NC_001806.1 + 3220 0.67 0.94885
Target:  5'- gUCCCCGCGcaggcGCAU-GAGCAccaGCGCgUCGc -3'
miRNA:   3'- -AGGGGUGU-----UGUAcCUCGUa--UGCG-AGC- -5'
5766 5' -53.3 NC_001806.1 + 10345 0.67 0.94885
Target:  5'- aCCCCACGcACAUGuGAGacuucggggGCGCUgGg -3'
miRNA:   3'- aGGGGUGU-UGUAC-CUCgua------UGCGAgC- -5'
5766 5' -53.3 NC_001806.1 + 119855 0.67 0.94885
Target:  5'- aCUCCGUGGCGUGGGGCGggcgACGCg-- -3'
miRNA:   3'- aGGGGUGUUGUACCUCGUa---UGCGagc -5'
5766 5' -53.3 NC_001806.1 + 52564 0.67 0.946216
Target:  5'- cUCCCCcggACGACAUGGccagcggcccgggggGGCAU-CGCgCGg -3'
miRNA:   3'- -AGGGG---UGUUGUACC---------------UCGUAuGCGaGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.