Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5767 | 3' | -56.7 | NC_001806.1 | + | 147770 | 0.65 | 0.906427 |
Target: 5'- cGGCCGCggacgcggggggCCCGgggcggggggcGGAGCCUggcaugggcgccgcGGGGGGCCUg -3' miRNA: 3'- -CUGGUG------------GGGC-----------UCUUGGA--------------UCCCUUGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 115746 | 0.65 | 0.906427 |
Target: 5'- aACCGCCCCGcccuucCUUGGGGAGugcgauucuuuuauCCCa -3' miRNA: 3'- cUGGUGGGGCucuu--GGAUCCCUU--------------GGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 66823 | 0.66 | 0.902727 |
Target: 5'- gGGCCGgCCCGGGuggccggugugcgccGCCUccuGGGGCCCg -3' miRNA: 3'- -CUGGUgGGGCUCu--------------UGGAuc-CCUUGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 10991 | 0.66 | 0.902102 |
Target: 5'- cACCGCCCCGcGAuccauguCCcGGGGAuagcaGCCg -3' miRNA: 3'- cUGGUGGGGCuCUu------GGaUCCCU-----UGGg -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 112871 | 0.66 | 0.902102 |
Target: 5'- cGCgCACgCCGGGGACCUAGuccccGCCCc -3' miRNA: 3'- cUG-GUGgGGCUCUUGGAUCccu--UGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 94010 | 0.66 | 0.902102 |
Target: 5'- uGGCCGCCCCGGuguccGAGCCcaccGuGGCCCg -3' miRNA: 3'- -CUGGUGGGGCU-----CUUGGauc-CcUUGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 151256 | 0.66 | 0.902102 |
Target: 5'- cGCC-CCCCGGGcccacGCCgggcgguGGGGGCCg -3' miRNA: 3'- cUGGuGGGGCUCu----UGGau-----CCCUUGGg -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 2497 | 0.66 | 0.902102 |
Target: 5'- cGCCGCCgCCGcacgcGGCCUGGGcggcgggggcGGGCCCg -3' miRNA: 3'- cUGGUGG-GGCuc---UUGGAUCC----------CUUGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 14370 | 0.66 | 0.902102 |
Target: 5'- aGCC-CCCCaGGGGGCUggggugAGGGGACaCUg -3' miRNA: 3'- cUGGuGGGG-CUCUUGGa-----UCCCUUG-GG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 26508 | 0.66 | 0.902102 |
Target: 5'- cGGCCGCCCCGcc-GCCgccccccgccGGuGGGCCCc -3' miRNA: 3'- -CUGGUGGGGCucuUGGau--------CC-CUUGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 86759 | 0.66 | 0.902102 |
Target: 5'- cGGCCGCCuCCGGGAaaucgGCCa--GGAGCUg -3' miRNA: 3'- -CUGGUGG-GGCUCU-----UGGaucCCUUGGg -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 143563 | 0.66 | 0.89958 |
Target: 5'- cGGCCACCgCCGcccacccacccACCUcGGGAuACCCa -3' miRNA: 3'- -CUGGUGG-GGCucu--------UGGAuCCCU-UGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 71046 | 0.66 | 0.898305 |
Target: 5'- cGACCGCgUCGuGcuuacgagccgucgcGACCUAGGG-GCCUg -3' miRNA: 3'- -CUGGUGgGGCuC---------------UUGGAUCCCuUGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 147283 | 0.66 | 0.895729 |
Target: 5'- ---gGCCgCCGAGGACgUcaGGGGggUCCc -3' miRNA: 3'- cuggUGG-GGCUCUUGgA--UCCCuuGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 2688 | 0.66 | 0.895079 |
Target: 5'- uGGCUggGCCCCGGGGgcugccgccgccaGCCgcccAGGGGgucgggGCCCu -3' miRNA: 3'- -CUGG--UGGGGCUCU-------------UGGa---UCCCU------UGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 20371 | 0.66 | 0.895079 |
Target: 5'- cGCCGucccguuggUCCCGgcguccggcgggcGGGACC-GGGGGGCCCg -3' miRNA: 3'- cUGGU---------GGGGC-------------UCUUGGaUCCCUUGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 29509 | 0.66 | 0.893773 |
Target: 5'- -uUCGCCCCGcgguaccuGAcCCUGGGGGggcacacggugaggGCCCu -3' miRNA: 3'- cuGGUGGGGCu-------CUuGGAUCCCU--------------UGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 70155 | 0.66 | 0.889132 |
Target: 5'- cGGCCGCCCgGGGcGGCCUcGGc--CCCa -3' miRNA: 3'- -CUGGUGGGgCUC-UUGGAuCCcuuGGG- -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 31133 | 0.66 | 0.889132 |
Target: 5'- cACCcugcuCCCCGAG-ACCgcGGGuAACCa -3' miRNA: 3'- cUGGu----GGGGCUCuUGGauCCC-UUGGg -5' |
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5767 | 3' | -56.7 | NC_001806.1 | + | 115927 | 0.66 | 0.889132 |
Target: 5'- aGACCuCCCCGcGcauGCuCUGGGGu-CCCu -3' miRNA: 3'- -CUGGuGGGGCuCu--UG-GAUCCCuuGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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