miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5767 5' -59.3 NC_001806.1 + 81450 0.66 0.7879
Target:  5'- cGCGGagaaaCUCCCGcacGGCCCCuuGGGUGCc -3'
miRNA:   3'- -CGCUc----GAGGGUcu-CUGGGGu-CCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 71993 0.66 0.7879
Target:  5'- uCGAGCUCCCcaacuuccucGAGuACCCaGGGGcGCg -3'
miRNA:   3'- cGCUCGAGGGu---------CUC-UGGGgUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 123178 0.66 0.787002
Target:  5'- cGCGAGaCUaUCAGAGcaccccccgggucGCCCgCAGGGUGg -3'
miRNA:   3'- -CGCUC-GAgGGUCUC-------------UGGG-GUCCCAUg -5'
5767 5' -59.3 NC_001806.1 + 74728 0.66 0.778866
Target:  5'- cGCGcGCUCCCuGGAGgcaauGCUCgAGGGaGCg -3'
miRNA:   3'- -CGCuCGAGGG-UCUC-----UGGGgUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 117967 0.66 0.778866
Target:  5'- aGCGAcGCcggUCCCGGAGGCUC--GGGUGu -3'
miRNA:   3'- -CGCU-CG---AGGGUCUCUGGGguCCCAUg -5'
5767 5' -59.3 NC_001806.1 + 92388 0.66 0.769707
Target:  5'- gGCGAcGUUgCCCGcGuGACCCUGGGGUu- -3'
miRNA:   3'- -CGCU-CGA-GGGU-CuCUGGGGUCCCAug -5'
5767 5' -59.3 NC_001806.1 + 67126 0.66 0.769707
Target:  5'- cGCGugcacccGCUCUCGGcucgccccGACCCCAGGGc-- -3'
miRNA:   3'- -CGCu------CGAGGGUCu-------CUGGGGUCCCaug -5'
5767 5' -59.3 NC_001806.1 + 95389 0.66 0.751043
Target:  5'- uGgGAGCUCCCGGGGGC---GGGG-GCg -3'
miRNA:   3'- -CgCUCGAGGGUCUCUGgggUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 4361 0.66 0.751043
Target:  5'- uGCG-GC-CCgCGGAGGCCgCGGGGg-- -3'
miRNA:   3'- -CGCuCGaGG-GUCUCUGGgGUCCCaug -5'
5767 5' -59.3 NC_001806.1 + 71062 0.66 0.751043
Target:  5'- aCGAGCcgucgcgaCCUAGGGGCCUgGGGGgACu -3'
miRNA:   3'- cGCUCGa-------GGGUCUCUGGGgUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 150811 0.66 0.751043
Target:  5'- cGgGAGCUCCgCGGaAGACCCaggccgccucGGGUGu -3'
miRNA:   3'- -CgCUCGAGG-GUC-UCUGGGgu--------CCCAUg -5'
5767 5' -59.3 NC_001806.1 + 3550 0.66 0.741556
Target:  5'- gGCGGGCgcggCggaCAGccGCCCCAGGGcgGCg -3'
miRNA:   3'- -CGCUCGa---Gg--GUCucUGGGGUCCCa-UG- -5'
5767 5' -59.3 NC_001806.1 + 59615 0.66 0.741556
Target:  5'- aGCGccGGggCCUuGGGGCCCCGgccGGGUACu -3'
miRNA:   3'- -CGC--UCgaGGGuCUCUGGGGU---CCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 15846 0.66 0.741556
Target:  5'- aCGGGC-CCCuuuuGGGGCCgCGGGGgGCc -3'
miRNA:   3'- cGCUCGaGGGu---CUCUGGgGUCCCaUG- -5'
5767 5' -59.3 NC_001806.1 + 132729 0.67 0.722316
Target:  5'- cGCGAGCUggCCCGGcguGGCCUCGGcGGc-- -3'
miRNA:   3'- -CGCUCGA--GGGUCu--CUGGGGUC-CCaug -5'
5767 5' -59.3 NC_001806.1 + 129698 0.67 0.722316
Target:  5'- -gGAcGcCUCuCCGGAGGCCCgGGGGgcCa -3'
miRNA:   3'- cgCU-C-GAG-GGUCUCUGGGgUCCCauG- -5'
5767 5' -59.3 NC_001806.1 + 106705 0.67 0.722316
Target:  5'- cCGGGCcCCCGGGcGGCCCCc-GGUAUc -3'
miRNA:   3'- cGCUCGaGGGUCU-CUGGGGucCCAUG- -5'
5767 5' -59.3 NC_001806.1 + 117655 0.67 0.712579
Target:  5'- cCGcGCUCCCgGGAGGCUCgCAGuGGUAg -3'
miRNA:   3'- cGCuCGAGGG-UCUCUGGG-GUC-CCAUg -5'
5767 5' -59.3 NC_001806.1 + 75368 0.67 0.702778
Target:  5'- cGCGGGUggccaucgCCCAGcucacGACCUUAGGGUcgGCu -3'
miRNA:   3'- -CGCUCGa-------GGGUCu----CUGGGGUCCCA--UG- -5'
5767 5' -59.3 NC_001806.1 + 74898 0.67 0.702778
Target:  5'- gGCGGGCuggucggaccUCCCcGAGGCCguUCGGGGgGCg -3'
miRNA:   3'- -CGCUCG----------AGGGuCUCUGG--GGUCCCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.