Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5767 | 5' | -59.3 | NC_001806.1 | + | 93574 | 0.72 | 0.414606 |
Target: 5'- cGCGAcgccguucgGCggCCCGGGGGCCCCGGGaccgGCa -3' miRNA: 3'- -CGCU---------CGa-GGGUCUCUGGGGUCCca--UG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 92388 | 0.66 | 0.769707 |
Target: 5'- gGCGAcGUUgCCCGcGuGACCCUGGGGUu- -3' miRNA: 3'- -CGCU-CGA-GGGU-CuCUGGGGUCCCAug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 90322 | 0.69 | 0.583022 |
Target: 5'- cGUGGGUUCUCGcacgacGGGGCUCgGGGGUACc -3' miRNA: 3'- -CGCUCGAGGGU------CUCUGGGgUCCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 81450 | 0.66 | 0.7879 |
Target: 5'- cGCGGagaaaCUCCCGcacGGCCCCuuGGGUGCc -3' miRNA: 3'- -CGCUc----GAGGGUcu-CUGGGGu-CCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 77524 | 0.72 | 0.423206 |
Target: 5'- aGUGAGCggaggCCCGG-GGCCCCu-GGUGCu -3' miRNA: 3'- -CGCUCGa----GGGUCuCUGGGGucCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 75368 | 0.67 | 0.702778 |
Target: 5'- cGCGGGUggccaucgCCCAGcucacGACCUUAGGGUcgGCu -3' miRNA: 3'- -CGCUCGa-------GGGUCu----CUGGGGUCCCA--UG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 74898 | 0.67 | 0.702778 |
Target: 5'- gGCGGGCuggucggaccUCCCcGAGGCCguUCGGGGgGCg -3' miRNA: 3'- -CGCUCG----------AGGGuCUCUGG--GGUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 74728 | 0.66 | 0.778866 |
Target: 5'- cGCGcGCUCCCuGGAGgcaauGCUCgAGGGaGCg -3' miRNA: 3'- -CGCuCGAGGG-UCUC-----UGGGgUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 71993 | 0.66 | 0.7879 |
Target: 5'- uCGAGCUCCCcaacuuccucGAGuACCCaGGGGcGCg -3' miRNA: 3'- cGCUCGAGGGu---------CUC-UGGGgUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 71262 | 0.68 | 0.623001 |
Target: 5'- -gGAGuCUCCCAGGGACCUgGaGGUccGCg -3' miRNA: 3'- cgCUC-GAGGGUCUCUGGGgUcCCA--UG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 71062 | 0.66 | 0.751043 |
Target: 5'- aCGAGCcgucgcgaCCUAGGGGCCUgGGGGgACu -3' miRNA: 3'- cGCUCGa-------GGGUCUCUGGGgUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 67126 | 0.66 | 0.769707 |
Target: 5'- cGCGugcacccGCUCUCGGcucgccccGACCCCAGGGc-- -3' miRNA: 3'- -CGCu------CGAGGGUCu-------CUGGGGUCCCaug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 60090 | 0.69 | 0.592982 |
Target: 5'- cGCGuuCUCC---GGGCCCUGGGGUACg -3' miRNA: 3'- -CGCucGAGGgucUCUGGGGUCCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 59979 | 0.67 | 0.683011 |
Target: 5'- cGCGgcaccucucuGGC-CUCGGGGACCCgGGGG-ACg -3' miRNA: 3'- -CGC----------UCGaGGGUCUCUGGGgUCCCaUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 59615 | 0.66 | 0.741556 |
Target: 5'- aGCGccGGggCCUuGGGGCCCCGgccGGGUACu -3' miRNA: 3'- -CGC--UCgaGGGuCUCUGGGGU---CCCAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 58080 | 0.75 | 0.305504 |
Target: 5'- cCGAGCUCCCggcugaaGGAGACCCCuGGcUAUg -3' miRNA: 3'- cGCUCGAGGG-------UCUCUGGGGuCCcAUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 58055 | 0.73 | 0.397732 |
Target: 5'- gGCucGCUCCCAGAGGCCCgGGaGGn-- -3' miRNA: 3'- -CGcuCGAGGGUCUCUGGGgUC-CCaug -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 57072 | 0.7 | 0.524182 |
Target: 5'- cCGGGCUCCCcGAGACUCCacagaacaAGGGccGCu -3' miRNA: 3'- cGCUCGAGGGuCUCUGGGG--------UCCCa-UG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 49351 | 0.68 | 0.643058 |
Target: 5'- cCGAGCgUCCCGGcAGcGCCCCGGGcccgaUGCg -3' miRNA: 3'- cGCUCG-AGGGUC-UC-UGGGGUCCc----AUG- -5' |
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5767 | 5' | -59.3 | NC_001806.1 | + | 41833 | 0.69 | 0.583022 |
Target: 5'- gGCGGGCg-UCAG-GGCCCCGGGcgcGUACg -3' miRNA: 3'- -CGCUCGagGGUCuCUGGGGUCC---CAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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