miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5768 3' -56 NC_001806.1 + 150892 0.66 0.922731
Target:  5'- -cGggCACGgGCCUCGGGccccaGGCacgGCCCGa -3'
miRNA:   3'- caCaaGUGCgUGGAGCUC-----CUG---UGGGC- -5'
5768 3' -56 NC_001806.1 + 70127 0.66 0.922731
Target:  5'- cUGggCGCGCugaucacccuCCUCGAaccGGcCGCCCGg -3'
miRNA:   3'- cACaaGUGCGu---------GGAGCU---CCuGUGGGC- -5'
5768 3' -56 NC_001806.1 + 6066 0.66 0.922731
Target:  5'- ----cCGCGCcgGCCcCGGGGGCggGCCCGg -3'
miRNA:   3'- cacaaGUGCG--UGGaGCUCCUG--UGGGC- -5'
5768 3' -56 NC_001806.1 + 103039 0.66 0.917135
Target:  5'- ---gUCuccaGCGCCUCcAGGGCGCCUGc -3'
miRNA:   3'- cacaAGug--CGUGGAGcUCCUGUGGGC- -5'
5768 3' -56 NC_001806.1 + 52066 0.66 0.917135
Target:  5'- -cGUUCGCGCGCCaUCu-GGACcgggguCCCa -3'
miRNA:   3'- caCAAGUGCGUGG-AGcuCCUGu-----GGGc -5'
5768 3' -56 NC_001806.1 + 91658 0.66 0.917135
Target:  5'- -cGcUCAUGCGCCUCc-GGGCGCgCCa -3'
miRNA:   3'- caCaAGUGCGUGGAGcuCCUGUG-GGc -5'
5768 3' -56 NC_001806.1 + 120248 0.66 0.911303
Target:  5'- -----uGCGCGCCgUCGAGGGgacCGCCCc -3'
miRNA:   3'- cacaagUGCGUGG-AGCUCCU---GUGGGc -5'
5768 3' -56 NC_001806.1 + 76854 0.66 0.911303
Target:  5'- -aGggCGCGCGCCUgcAGGcgcucuucgACACCCGu -3'
miRNA:   3'- caCaaGUGCGUGGAgcUCC---------UGUGGGC- -5'
5768 3' -56 NC_001806.1 + 100718 0.67 0.871488
Target:  5'- cGUGUgggUCA-GCGCCUCcacgccGGGCGCCCa -3'
miRNA:   3'- -CACA---AGUgCGUGGAGcu----CCUGUGGGc -5'
5768 3' -56 NC_001806.1 + 21312 0.67 0.864082
Target:  5'- -cGggCAcCGaCGCCggCGAGGACGCCgGg -3'
miRNA:   3'- caCaaGU-GC-GUGGa-GCUCCUGUGGgC- -5'
5768 3' -56 NC_001806.1 + 69976 0.67 0.856469
Target:  5'- -cGUUCugGC-CCugguggUCGGGGACGCgCUGa -3'
miRNA:   3'- caCAAGugCGuGG------AGCUCCUGUG-GGC- -5'
5768 3' -56 NC_001806.1 + 128698 0.67 0.856469
Target:  5'- ----cCGCGCACCUCGGccguGGAguuCACCCc -3'
miRNA:   3'- cacaaGUGCGUGGAGCU----CCU---GUGGGc -5'
5768 3' -56 NC_001806.1 + 4405 0.68 0.848655
Target:  5'- uUGggCGCG-GCCUCGgagaggggGGGugGCCCGg -3'
miRNA:   3'- cACaaGUGCgUGGAGC--------UCCugUGGGC- -5'
5768 3' -56 NC_001806.1 + 143580 0.68 0.840647
Target:  5'- ----cCACcCACCUCG-GGAUACCCa -3'
miRNA:   3'- cacaaGUGcGUGGAGCuCCUGUGGGc -5'
5768 3' -56 NC_001806.1 + 23021 0.68 0.824074
Target:  5'- gGUGcUCAUGCGCCUgCGcGGGgACCUGc -3'
miRNA:   3'- -CACaAGUGCGUGGA-GCuCCUgUGGGC- -5'
5768 3' -56 NC_001806.1 + 133300 0.68 0.815525
Target:  5'- cUGUgcCugGC-CCUCGAGGgcgucuACACCCa -3'
miRNA:   3'- cACAa-GugCGuGGAGCUCC------UGUGGGc -5'
5768 3' -56 NC_001806.1 + 31226 0.69 0.797939
Target:  5'- cGUGgggaaCAUGCugUUCGAccaGGGCACCCu -3'
miRNA:   3'- -CACaa---GUGCGugGAGCU---CCUGUGGGc -5'
5768 3' -56 NC_001806.1 + 134173 0.69 0.788919
Target:  5'- -gGcgCGCGCACCUCcuccGACGCCCa -3'
miRNA:   3'- caCaaGUGCGUGGAGcuc-CUGUGGGc -5'
5768 3' -56 NC_001806.1 + 38540 0.69 0.77976
Target:  5'- gGUGgUgGCGCACCgguagCGAGcGACcggGCCCGa -3'
miRNA:   3'- -CACaAgUGCGUGGa----GCUC-CUG---UGGGC- -5'
5768 3' -56 NC_001806.1 + 21268 0.7 0.751531
Target:  5'- ----cCACG-ACCUCGAcGACGCCCGg -3'
miRNA:   3'- cacaaGUGCgUGGAGCUcCUGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.