miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5784 3' -52.3 NC_001806.1 + 99578 0.66 0.98668
Target:  5'- uGgcGgcGGGGGGgaacgCGGGcUCCGucGGu -3'
miRNA:   3'- -CuuCuuCUCCCCa----GCCCuAGGUuuCC- -5'
5784 3' -52.3 NC_001806.1 + 148180 0.66 0.98668
Target:  5'- --cGuGGGGGGGcgCGGGGcgUCCGgcGGGGg -3'
miRNA:   3'- cuuCuUCUCCCCa-GCCCU--AGGU--UUCC- -5'
5784 3' -52.3 NC_001806.1 + 30416 0.66 0.98668
Target:  5'- ----cGGGGGGGcCGGGcgUgGAGGGu -3'
miRNA:   3'- cuucuUCUCCCCaGCCCuaGgUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 72547 0.66 0.98668
Target:  5'- -cGGGAG-GGGGUaGGGggCCcGGGGc -3'
miRNA:   3'- cuUCUUCuCCCCAgCCCuaGGuUUCC- -5'
5784 3' -52.3 NC_001806.1 + 83271 0.66 0.98497
Target:  5'- cGAcGGAGGGGGuUCGGGcgggCgCGGAGGa -3'
miRNA:   3'- -CUuCUUCUCCCcAGCCCua--G-GUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 53605 0.66 0.983097
Target:  5'- gGAGGggGAGGGaagGGGAga-AGAGGa -3'
miRNA:   3'- -CUUCuuCUCCCcagCCCUaggUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 86028 0.66 0.983097
Target:  5'- cGggGAgggcagggccgcGGGGGGGgCGGGcucGUCCccuGGGg -3'
miRNA:   3'- -CuuCU------------UCUCCCCaGCCC---UAGGuu-UCC- -5'
5784 3' -52.3 NC_001806.1 + 103427 0.66 0.983097
Target:  5'- cAAGAuGGGGGGU-GGGAUgaGGGGGc -3'
miRNA:   3'- cUUCUuCUCCCCAgCCCUAggUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 147387 0.66 0.981054
Target:  5'- --cGAGGGGGGGacgCGuGGA-CUggGGGg -3'
miRNA:   3'- cuuCUUCUCCCCa--GC-CCUaGGuuUCC- -5'
5784 3' -52.3 NC_001806.1 + 134306 0.66 0.981054
Target:  5'- aGAGAAcGGGGGG-CGGGuuguuggCCAGcAGGu -3'
miRNA:   3'- cUUCUU-CUCCCCaGCCCua-----GGUU-UCC- -5'
5784 3' -52.3 NC_001806.1 + 34362 0.66 0.978831
Target:  5'- -cGGggGAccGGGGcUGGGuAUCCcGAGGu -3'
miRNA:   3'- cuUCuuCU--CCCCaGCCC-UAGGuUUCC- -5'
5784 3' -52.3 NC_001806.1 + 43715 0.66 0.978831
Target:  5'- gGggGAacccggucGGGGGGGaUUGGGGUgaCCGAGGc -3'
miRNA:   3'- -CuuCU--------UCUCCCC-AGCCCUA--GGUUUCc -5'
5784 3' -52.3 NC_001806.1 + 145681 0.66 0.978831
Target:  5'- cGggGGugGGAaGGGUCGGGGga-GGGGGg -3'
miRNA:   3'- -CuuCU--UCUcCCCAGCCCUaggUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 3316 0.67 0.976421
Target:  5'- cGggGAAGcGGGGcccgCGGGucccUCCGGccgcGGGg -3'
miRNA:   3'- -CuuCUUCuCCCCa---GCCCu---AGGUU----UCC- -5'
5784 3' -52.3 NC_001806.1 + 93910 0.67 0.973815
Target:  5'- --cGAAGAGGGGgacccCGGGGcucagCCAGAcgccGGg -3'
miRNA:   3'- cuuCUUCUCCCCa----GCCCUa----GGUUU----CC- -5'
5784 3' -52.3 NC_001806.1 + 1491 0.67 0.973815
Target:  5'- -cAGcGGGGGGGcgucgucgUCGGGcUCCAGcAGGg -3'
miRNA:   3'- cuUCuUCUCCCC--------AGCCCuAGGUU-UCC- -5'
5784 3' -52.3 NC_001806.1 + 9135 0.67 0.973544
Target:  5'- cAGGGAGGGGGcGUCGacagccuGGAgggCCAucGGg -3'
miRNA:   3'- cUUCUUCUCCC-CAGC-------CCUa--GGUuuCC- -5'
5784 3' -52.3 NC_001806.1 + 29016 0.67 0.971007
Target:  5'- cGAAGuGGGGGGG-CGGGGggacgCCGAc-- -3'
miRNA:   3'- -CUUCuUCUCCCCaGCCCUa----GGUUucc -5'
5784 3' -52.3 NC_001806.1 + 143330 0.67 0.971007
Target:  5'- aGggGggGGGGGGgcgcUGGuuGGUCaaaAAAGGg -3'
miRNA:   3'- -CuuCuuCUCCCCa---GCC--CUAGg--UUUCC- -5'
5784 3' -52.3 NC_001806.1 + 34075 0.67 0.971007
Target:  5'- cGAGGAGAcuGGGGUgGGGGUgUCGGuGGg -3'
miRNA:   3'- cUUCUUCU--CCCCAgCCCUA-GGUUuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.