Results 1 - 20 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5788 | 3' | -53.3 | NC_001806.1 | + | 147763 | 0.66 | 0.969341 |
Target: 5'- --cCCGACGCgGCCGCgGAC-GCGGg -3' miRNA: 3'- uguGGUUGUGgUGGUGgUUGuCGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 18855 | 0.66 | 0.969341 |
Target: 5'- cCGCCgGACACCugCAgCAaACGGCAccacguGCg -3' miRNA: 3'- uGUGG-UUGUGGugGUgGU-UGUCGU------CG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 6050 | 0.66 | 0.969341 |
Target: 5'- gGCGCCGugcccgacuccGCGCCgGCC-CCGGgGGCGGg -3' miRNA: 3'- -UGUGGU-----------UGUGG-UGGuGGUUgUCGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 108607 | 0.66 | 0.969341 |
Target: 5'- cCGCUAGCACCAgggaggUCACCccuguCAGCcGCg -3' miRNA: 3'- uGUGGUUGUGGU------GGUGGuu---GUCGuCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 75708 | 0.66 | 0.969341 |
Target: 5'- cCACgAGCGCUggGCCGCCGACGuggaGGCc -3' miRNA: 3'- uGUGgUUGUGG--UGGUGGUUGUcg--UCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 46428 | 0.66 | 0.968102 |
Target: 5'- uGCGCCGcggucggGCGCCugGCgGCCAugcaugcccggaugGCGGCGGUc -3' miRNA: 3'- -UGUGGU-------UGUGG--UGgUGGU--------------UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 112612 | 0.66 | 0.967469 |
Target: 5'- -gACguGgGCCGCCACCuGCuggagaugcaggaggAGCAGCu -3' miRNA: 3'- ugUGguUgUGGUGGUGGuUG---------------UCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 112028 | 0.66 | 0.966178 |
Target: 5'- cCACCGAgGCCAUCGCCcugcucACGGgGGa -3' miRNA: 3'- uGUGGUUgUGGUGGUGGu-----UGUCgUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 70387 | 0.66 | 0.966178 |
Target: 5'- uCGCCAACuggaggaCGCCAUCGugcuGCuGCGGCu -3' miRNA: 3'- uGUGGUUGug-----GUGGUGGU----UGuCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 137494 | 0.66 | 0.966178 |
Target: 5'- -gACCAGCaACC-CCGCCucgcuggagGACcuGCAGCg -3' miRNA: 3'- ugUGGUUG-UGGuGGUGG---------UUGu-CGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 48033 | 0.66 | 0.966178 |
Target: 5'- aGCACCuuaACCucCCGCUggUGcGCAGCg -3' miRNA: 3'- -UGUGGuugUGGu-GGUGGuuGU-CGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 51830 | 0.66 | 0.966178 |
Target: 5'- -uGCgCGACGCCcuCCAUCGGauuCAGCAGUa -3' miRNA: 3'- ugUG-GUUGUGGu-GGUGGUU---GUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 17028 | 0.66 | 0.966178 |
Target: 5'- cGCACCGugAgUGCCaACCAACgAGCAc- -3' miRNA: 3'- -UGUGGUugUgGUGG-UGGUUG-UCGUcg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 68640 | 0.66 | 0.966178 |
Target: 5'- cCGCUGGCaaACCGUCACCAAgAGCuGCu -3' miRNA: 3'- uGUGGUUG--UGGUGGUGGUUgUCGuCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 46163 | 0.66 | 0.966178 |
Target: 5'- cACACC--CACCACCGCCcccCGGgccccccgaaccCAGCg -3' miRNA: 3'- -UGUGGuuGUGGUGGUGGuu-GUC------------GUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 118767 | 0.66 | 0.962792 |
Target: 5'- cCGCCcugauGCGCgGCCGCCccggacucggGACGGCcGCa -3' miRNA: 3'- uGUGGu----UGUGgUGGUGG----------UUGUCGuCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 3559 | 0.66 | 0.962792 |
Target: 5'- -gGCgGACAgCCGCC-CCAG-GGCGGCg -3' miRNA: 3'- ugUGgUUGU-GGUGGuGGUUgUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 101713 | 0.66 | 0.962792 |
Target: 5'- -aGCCAAUgcguGCCugCugCGcCAGCAGg -3' miRNA: 3'- ugUGGUUG----UGGugGugGUuGUCGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 56913 | 0.66 | 0.962792 |
Target: 5'- cCGCCGACgACCAUCcCCAgggugccgacgaACAGgGGCc -3' miRNA: 3'- uGUGGUUG-UGGUGGuGGU------------UGUCgUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 51408 | 0.66 | 0.962792 |
Target: 5'- -gGCCGugGgCGCCuu--GCGGCAGCg -3' miRNA: 3'- ugUGGUugUgGUGGugguUGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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