miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 151536 0.68 0.909602
Target:  5'- gGCGCCcguGgGCCcggGCgGCCGGgGGCGGCg -3'
miRNA:   3'- -UGUGGu--UgUGG---UGgUGGUUgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 151378 0.71 0.790115
Target:  5'- gACGCgGACucgggaacguggaGCCACUgGCgCAGCAGCAGCg -3'
miRNA:   3'- -UGUGgUUG-------------UGGUGG-UG-GUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 151014 0.68 0.909602
Target:  5'- -gGCCGAgGCCcagACCACCA--GGUGGCg -3'
miRNA:   3'- ugUGGUUgUGG---UGGUGGUugUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 150676 0.67 0.942332
Target:  5'- cCGCC-GCGCUggcgGCCGCCGAUGGcCAGUc -3'
miRNA:   3'- uGUGGuUGUGG----UGGUGGUUGUC-GUCG- -5'
5788 3' -53.3 NC_001806.1 + 148131 0.66 0.949537
Target:  5'- gGCugCGugagACGCC-CCGCCcgucacggggggcGCGGCGGCg -3'
miRNA:   3'- -UGugGU----UGUGGuGGUGGu------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 147763 0.66 0.969341
Target:  5'- --cCCGACGCgGCCGCgGAC-GCGGg -3'
miRNA:   3'- uguGGUUGUGgUGGUGgUUGuCGUCg -5'
5788 3' -53.3 NC_001806.1 + 147726 0.7 0.844091
Target:  5'- cACGCaCGGgGCCACgGCCGcGCGGgGGCg -3'
miRNA:   3'- -UGUG-GUUgUGGUGgUGGU-UGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 147670 0.67 0.937505
Target:  5'- -gGCCGGCuCCGCC-CCGGgGGCcggGGCg -3'
miRNA:   3'- ugUGGUUGuGGUGGuGGUUgUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 147435 0.72 0.730575
Target:  5'- cGCGCCucuuccucggacGCACCGCCGCCuccuGCucgacagaGGCGGCg -3'
miRNA:   3'- -UGUGGu-----------UGUGGUGGUGGu---UG--------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 147163 0.69 0.87551
Target:  5'- gGCACCGACgGCC-CCGCCcgaggaGGCGGaAGCg -3'
miRNA:   3'- -UGUGGUUG-UGGuGGUGG------UUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 146216 0.66 0.95124
Target:  5'- aACACCAGaGCCugC-CCAACA-UGGCa -3'
miRNA:   3'- -UGUGGUUgUGGugGuGGUUGUcGUCG- -5'
5788 3' -53.3 NC_001806.1 + 145754 0.72 0.742624
Target:  5'- cACACCAACcCCACguCCccCGGCGGUc -3'
miRNA:   3'- -UGUGGUUGuGGUGguGGuuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 145715 0.72 0.752553
Target:  5'- gUACCGGC-CCACCugGCCGcGCGGguGCg -3'
miRNA:   3'- uGUGGUUGuGGUGG--UGGU-UGUCguCG- -5'
5788 3' -53.3 NC_001806.1 + 144933 0.72 0.752553
Target:  5'- aACACuCGGgGuuACCGCCAACGGcCGGCc -3'
miRNA:   3'- -UGUG-GUUgUggUGGUGGUUGUC-GUCG- -5'
5788 3' -53.3 NC_001806.1 + 144212 0.8 0.327044
Target:  5'- cCGCCGACACCGCagaGCCGGCgcgcgcacucacaAGCGGCa -3'
miRNA:   3'- uGUGGUUGUGGUGg--UGGUUG-------------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 144158 0.71 0.781629
Target:  5'- cCGCCGGCcgGCUACCgagACCGaacACGGCGGCc -3'
miRNA:   3'- uGUGGUUG--UGGUGG---UGGU---UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 143872 0.68 0.921518
Target:  5'- cCACCGACACCcCCACCc-CAGUc-- -3'
miRNA:   3'- uGUGGUUGUGGuGGUGGuuGUCGucg -5'
5788 3' -53.3 NC_001806.1 + 142000 0.7 0.835711
Target:  5'- cACACCAGCGggACCAgCCucuAgGGCGGCg -3'
miRNA:   3'- -UGUGGUUGUggUGGU-GGu--UgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 140036 0.69 0.882806
Target:  5'- aGCGCCcggAGCGCCACgGCCGGCAuuuugaccGUGGUc -3'
miRNA:   3'- -UGUGG---UUGUGGUGgUGGUUGU--------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 139836 0.73 0.649867
Target:  5'- aGCGCCAGgACCGCCuGCCGcGCGGaGGCg -3'
miRNA:   3'- -UGUGGUUgUGGUGG-UGGU-UGUCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.