miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 5' -63.9 NC_001806.1 + 151706 0.68 0.494181
Target:  5'- gGGCUgCCCGCCGccacCGCuuuaaaGGGCCGCGc -3'
miRNA:   3'- gCCGA-GGGCGGUca--GCG------CUCGGCGCc -5'
5788 5' -63.9 NC_001806.1 + 151534 0.68 0.475465
Target:  5'- aCGGCgCCCgugggcccgggcgGCCGGgggcggCGgGGGCCGCGa -3'
miRNA:   3'- -GCCGaGGG-------------CGGUCa-----GCgCUCGGCGCc -5'
5788 5' -63.9 NC_001806.1 + 151342 0.66 0.593846
Target:  5'- gGGCugUCCgGCCAGUCGuCGucaucgucgucgucGGaCGCGGa -3'
miRNA:   3'- gCCG--AGGgCGGUCAGC-GC--------------UCgGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 151264 0.69 0.441683
Target:  5'- gGGC-CCaCGCCGGgcggUGgGGGCCGgGGc -3'
miRNA:   3'- gCCGaGG-GCGGUCa---GCgCUCGGCgCC- -5'
5788 5' -63.9 NC_001806.1 + 151053 0.68 0.458841
Target:  5'- gGGCgagaagcgcaCCCGCgCgggGGUCGCGggGGUCGCGGg -3'
miRNA:   3'- gCCGa---------GGGCG-G---UCAGCGC--UCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 150970 0.69 0.433241
Target:  5'- uCGGCccgCUCGCgGGcCcaCGAGCCGCGGc -3'
miRNA:   3'- -GCCGa--GGGCGgUCaGc-GCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 150763 0.69 0.440834
Target:  5'- gCGGCUCCUGCCA-UCGUcucuccggaGAGCggcuuggUGCGGa -3'
miRNA:   3'- -GCCGAGGGCGGUcAGCG---------CUCG-------GCGCC- -5'
5788 5' -63.9 NC_001806.1 + 148009 0.67 0.512312
Target:  5'- gCGGCUCgCGaCUGG-CGgGAGCCGCc- -3'
miRNA:   3'- -GCCGAGgGC-GGUCaGCgCUCGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 147739 0.68 0.494181
Target:  5'- aCGGC-CgCGCgGGggcgCGCGggucccgacgcGGCCGCGGa -3'
miRNA:   3'- -GCCGaGgGCGgUCa---GCGC-----------UCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 147672 0.67 0.503211
Target:  5'- cCGGCUCCgCcCCGGggGcCGGGgCGCGGg -3'
miRNA:   3'- -GCCGAGG-GcGGUCagC-GCUCgGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 147372 0.67 0.503211
Target:  5'- uGGCcCCUGCCGG-CGCGAGggggggaCGCGu -3'
miRNA:   3'- gCCGaGGGCGGUCaGCGCUCg------GCGCc -5'
5788 5' -63.9 NC_001806.1 + 147227 0.68 0.485226
Target:  5'- gCGGCcCCCGCgggGGUCG-GGGCCGaGGa -3'
miRNA:   3'- -GCCGaGGGCGg--UCAGCgCUCGGCgCC- -5'
5788 5' -63.9 NC_001806.1 + 147170 0.66 0.596711
Target:  5'- aCGGC-CCCGCCcgaGGagGCG-GaaGCGGa -3'
miRNA:   3'- -GCCGaGGGCGG---UCagCGCuCggCGCC- -5'
5788 5' -63.9 NC_001806.1 + 146845 0.7 0.369266
Target:  5'- gCGGCUCCaGCCGGggacCGCGGcCCGCa- -3'
miRNA:   3'- -GCCGAGGgCGGUCa---GCGCUcGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 135614 0.68 0.494181
Target:  5'- gGGCcCCCGCU-GUUGCGcgccggAGCuCGCGGu -3'
miRNA:   3'- gCCGaGGGCGGuCAGCGC------UCG-GCGCC- -5'
5788 5' -63.9 NC_001806.1 + 135063 0.67 0.530712
Target:  5'- cCGGC-CCCGCgGGgacgCGcCGGGCCGgaaauCGGc -3'
miRNA:   3'- -GCCGaGGGCGgUCa---GC-GCUCGGC-----GCC- -5'
5788 5' -63.9 NC_001806.1 + 132076 0.69 0.400439
Target:  5'- gGGCccgCCCGCCGccccUCGCGccgcucuccuGGUCGCGGa -3'
miRNA:   3'- gCCGa--GGGCGGUc---AGCGC----------UCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 127752 0.68 0.476348
Target:  5'- gGGCgggCUGCCGGgUGCGGGCCuGUGGc -3'
miRNA:   3'- gCCGag-GGCGGUCaGCGCUCGG-CGCC- -5'
5788 5' -63.9 NC_001806.1 + 125849 0.66 0.58717
Target:  5'- gGGCcCCCgGCC-GcCGCGGacGCCGUGGc -3'
miRNA:   3'- gCCGaGGG-CGGuCaGCGCU--CGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 123817 0.7 0.363984
Target:  5'- aCGGgUCCCGCCAccgauccggccucCGCGAGCggcuucgCGCGGg -3'
miRNA:   3'- -GCCgAGGGCGGUca-----------GCGCUCG-------GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.