miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5791 3' -67.7 NC_001806.1 + 60589 0.66 0.430382
Target:  5'- aUCCCCgGgACguuaccgggggCCaCCCCggCCCCAGGUc -3'
miRNA:   3'- gAGGGGgCgUGa----------GG-GGGG--GGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 67133 0.66 0.430382
Target:  5'- ---aCCCGCucucgGCUCgCCCCgaCCCCAGGg -3'
miRNA:   3'- gaggGGGCG-----UGAG-GGGGg-GGGGUCCg -5'
5791 3' -67.7 NC_001806.1 + 117704 0.66 0.430382
Target:  5'- ---gCCCGCGuCggCCCCCUCCgAGGCc -3'
miRNA:   3'- gaggGGGCGU-GagGGGGGGGGgUCCG- -5'
5791 3' -67.7 NC_001806.1 + 46979 0.66 0.430382
Target:  5'- uUCCCgCUGCccACUUCCCCCCauaAGGUc -3'
miRNA:   3'- gAGGG-GGCG--UGAGGGGGGGgggUCCG- -5'
5791 3' -67.7 NC_001806.1 + 149221 0.66 0.430382
Target:  5'- uUCCCUCuu-CUCCCgCCCUCCAGacGCa -3'
miRNA:   3'- gAGGGGGcguGAGGGgGGGGGGUC--CG- -5'
5791 3' -67.7 NC_001806.1 + 57875 0.66 0.422192
Target:  5'- -gUCCgCGCGCcaUCCUCgCCCCCCGaGCg -3'
miRNA:   3'- gaGGGgGCGUG--AGGGG-GGGGGGUcCG- -5'
5791 3' -67.7 NC_001806.1 + 26513 0.66 0.422192
Target:  5'- --gCCCCGC-CgCCgCCCCCCgCCgguGGGCc -3'
miRNA:   3'- gagGGGGCGuGaGG-GGGGGG-GG---UCCG- -5'
5791 3' -67.7 NC_001806.1 + 55855 0.66 0.422192
Target:  5'- nCUCCacaggaccaCgGCAaggCCCaCCCgCCCCGGGCc -3'
miRNA:   3'- -GAGGg--------GgCGUga-GGG-GGG-GGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 1539 0.66 0.414097
Target:  5'- gUCCCuCCGCGg-CCCgCgCCaCCGGGCc -3'
miRNA:   3'- gAGGG-GGCGUgaGGGgGgGG-GGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 48627 0.66 0.414097
Target:  5'- aUCCCCCGUcuggguuUUCCCCUCCCgUCAccGGUu -3'
miRNA:   3'- gAGGGGGCGu------GAGGGGGGGG-GGU--CCG- -5'
5791 3' -67.7 NC_001806.1 + 83301 0.66 0.414097
Target:  5'- --aCCCCGCAa--CCCgCCCCCGGa- -3'
miRNA:   3'- gagGGGGCGUgagGGGgGGGGGUCcg -5'
5791 3' -67.7 NC_001806.1 + 70261 0.66 0.414097
Target:  5'- -gCCCCUGguCcagcugcagCCCCCCCCgCCccccgagguGGGCa -3'
miRNA:   3'- gaGGGGGCguGa--------GGGGGGGG-GG---------UCCG- -5'
5791 3' -67.7 NC_001806.1 + 55259 0.66 0.414097
Target:  5'- -gCgCCCGgGCcggCCCCCuCCgCCCAGaGCa -3'
miRNA:   3'- gaGgGGGCgUGa--GGGGG-GG-GGGUC-CG- -5'
5791 3' -67.7 NC_001806.1 + 79642 0.66 0.413293
Target:  5'- cCUCCuCCCGCGCUUCUgCCgCUucuucguCCGGGUc -3'
miRNA:   3'- -GAGG-GGGCGUGAGGGgGG-GG-------GGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 101569 0.66 0.406097
Target:  5'- uCUCCCUaaUGC-C-CCCUCCCCCCucGCc -3'
miRNA:   3'- -GAGGGG--GCGuGaGGGGGGGGGGucCG- -5'
5791 3' -67.7 NC_001806.1 + 6824 0.66 0.406097
Target:  5'- gUCCCCUGC--UgCgCUCUCCCGGGCu -3'
miRNA:   3'- gAGGGGGCGugAgGgGGGGGGGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 81932 0.66 0.406097
Target:  5'- cCUCggCCCCGUACgCCUCCCgggaCCgCCGGGUu -3'
miRNA:   3'- -GAG--GGGGCGUGaGGGGGG----GG-GGUCCG- -5'
5791 3' -67.7 NC_001806.1 + 131546 0.66 0.398196
Target:  5'- -aCCCCaaaaACcgCCCCCCCCCCGucaccGGUu -3'
miRNA:   3'- gaGGGGgcg-UGa-GGGGGGGGGGU-----CCG- -5'
5791 3' -67.7 NC_001806.1 + 26852 0.66 0.398196
Target:  5'- -cCCCCCGCGa-CCCCCgcgaCCCCC--GCg -3'
miRNA:   3'- gaGGGGGCGUgaGGGGG----GGGGGucCG- -5'
5791 3' -67.7 NC_001806.1 + 46065 0.66 0.398196
Target:  5'- gUCCCCCGgACgcggcgUCCCgUUUCCgGGGCg -3'
miRNA:   3'- gAGGGGGCgUG------AGGGgGGGGGgUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.