miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 33723 0.66 0.999994
Target:  5'- --------uGCCGCuugugAGUGCGcGCGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUG-----UCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 31766 0.66 0.999994
Target:  5'- -----cAGAGCCGCGGCcCggGCuGCCu -3'
miRNA:   3'- cuuuuuUUUUGGUGUCGcGuaCG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 74503 0.66 0.999994
Target:  5'- ------cGAGCUGCGGCGCuucGaCGCCc -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCGua-C-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 50905 0.66 0.999994
Target:  5'- -------cGGCCGCGGaGCAcguggaucUGCGCCc -3'
miRNA:   3'- cuuuuuuuUUGGUGUCgCGU--------ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 109371 0.66 0.999994
Target:  5'- ---------cCCGCuuGGCGCccGCGCCc -3'
miRNA:   3'- cuuuuuuuuuGGUG--UCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 56881 0.66 0.999994
Target:  5'- --------cACCAgAGCGCGcGCuGCCu -3'
miRNA:   3'- cuuuuuuuuUGGUgUCGCGUaCG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 93409 0.66 0.999994
Target:  5'- cGAGGAGAugaugGAGCUgACcGCGCGUGC-CCu -3'
miRNA:   3'- -CUUUUUU-----UUUGG-UGuCGCGUACGcGG- -5'
5792 3' -45.3 NC_001806.1 + 96604 0.66 0.999994
Target:  5'- -----cAAAGCCGCcGCGCcc-CGCCg -3'
miRNA:   3'- cuuuuuUUUUGGUGuCGCGuacGCGG- -5'
5792 3' -45.3 NC_001806.1 + 102267 0.66 0.999992
Target:  5'- uGAGGAAcgcGGCgGCGGCGCgGuuuaugucgucguggUGCGCCa -3'
miRNA:   3'- -CUUUUUuu-UUGgUGUCGCG-U---------------ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 147684 0.66 0.999991
Target:  5'- ----cGGGGGCCGgGGCGCGgggGCggGCCc -3'
miRNA:   3'- cuuuuUUUUUGGUgUCGCGUa--CG--CGG- -5'
5792 3' -45.3 NC_001806.1 + 147109 0.66 0.999991
Target:  5'- -------cGGCCcagaaGCAGCGCggGgGCCg -3'
miRNA:   3'- cuuuuuuuUUGG-----UGUCGCGuaCgCGG- -5'
5792 3' -45.3 NC_001806.1 + 50332 0.66 0.999991
Target:  5'- ---cGGGAGGCCGCcuuccuggGGCGCGUGCuggauguGCUg -3'
miRNA:   3'- cuuuUUUUUUGGUG--------UCGCGUACG-------CGG- -5'
5792 3' -45.3 NC_001806.1 + 72347 0.66 0.999991
Target:  5'- ----cGGGAGCCAUGGUGUuuuucGUGCCg -3'
miRNA:   3'- cuuuuUUUUUGGUGUCGCGua---CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 3163 0.66 0.999991
Target:  5'- ------cAGGCuCACGGCGCGcacgGCgGCCa -3'
miRNA:   3'- cuuuuuuUUUG-GUGUCGCGUa---CG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 66802 0.66 0.999991
Target:  5'- --cGGGAGGAUCACGGCcgagcggggccgGCccggguggccgguGUGCGCCg -3'
miRNA:   3'- cuuUUUUUUUGGUGUCG------------CG-------------UACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 100387 0.66 0.999991
Target:  5'- --------cGCCggGCGGCGCggGgGCCg -3'
miRNA:   3'- cuuuuuuuuUGG--UGUCGCGuaCgCGG- -5'
5792 3' -45.3 NC_001806.1 + 132658 0.66 0.999991
Target:  5'- -----cGGGGCCGCGGCcGCuuaCGCCg -3'
miRNA:   3'- cuuuuuUUUUGGUGUCG-CGuacGCGG- -5'
5792 3' -45.3 NC_001806.1 + 136322 0.66 0.99999
Target:  5'- --------cGCCAC-GCGCGUggagucgaaggccaGCGCCa -3'
miRNA:   3'- cuuuuuuuuUGGUGuCGCGUA--------------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 132219 0.66 0.999987
Target:  5'- ---------cCCAguGCGCGUcCGCCg -3'
miRNA:   3'- cuuuuuuuuuGGUguCGCGUAcGCGG- -5'
5792 3' -45.3 NC_001806.1 + 72020 0.66 0.999987
Target:  5'- ----cAGGGGCgCGCGGCGgAcUGCGCUg -3'
miRNA:   3'- cuuuuUUUUUG-GUGUCGCgU-ACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.