miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 151388 0.67 0.999966
Target:  5'- cGGGAAcguGGAGCCACuGGCGCA-GCaGCa -3'
miRNA:   3'- -CUUUUu--UUUUGGUG-UCGCGUaCG-CGg -5'
5792 3' -45.3 NC_001806.1 + 151288 0.66 0.999987
Target:  5'- cGggGccGGGGGGCgGCGGCG-GUGgGCCg -3'
miRNA:   3'- -CuuU--UUUUUUGgUGUCGCgUACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 151151 0.66 0.999982
Target:  5'- ---------gUCGCAgGCGCAggcGCGCCa -3'
miRNA:   3'- cuuuuuuuuuGGUGU-CGCGUa--CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 150990 0.71 0.996317
Target:  5'- ------cGAGCCGCGGCGCGccaggcggGCgGCCg -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCGUa-------CG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 147732 0.68 0.999854
Target:  5'- -----cGGGGCCACGgccGCGCGgggGCGCg -3'
miRNA:   3'- cuuuuuUUUUGGUGU---CGCGUa--CGCGg -5'
5792 3' -45.3 NC_001806.1 + 147684 0.66 0.999991
Target:  5'- ----cGGGGGCCGgGGCGCGgggGCggGCCc -3'
miRNA:   3'- cuuuuUUUUUGGUgUCGCGUa--CG--CGG- -5'
5792 3' -45.3 NC_001806.1 + 147483 0.67 0.999911
Target:  5'- cGGAGGGGAGCgggGCGGCGCcggagggggcgGCGCCg -3'
miRNA:   3'- cUUUUUUUUUGg--UGUCGCGua---------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 147109 0.66 0.999991
Target:  5'- -------cGGCCcagaaGCAGCGCggGgGCCg -3'
miRNA:   3'- cuuuuuuuUUGG-----UGUCGCGuaCgCGG- -5'
5792 3' -45.3 NC_001806.1 + 146856 0.68 0.999854
Target:  5'- ----cGGGGACCGCGGCccGCAgccggGuCGCCa -3'
miRNA:   3'- cuuuuUUUUUGGUGUCG--CGUa----C-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 146682 0.67 0.999953
Target:  5'- -----cGAGACCGCAGgcUGCGgaaguccagGCGCCc -3'
miRNA:   3'- cuuuuuUUUUGGUGUC--GCGUa--------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 145728 0.66 0.999975
Target:  5'- -------uGGCCGC-GCGgGUGCGCg -3'
miRNA:   3'- cuuuuuuuUUGGUGuCGCgUACGCGg -5'
5792 3' -45.3 NC_001806.1 + 145577 0.89 0.390768
Target:  5'- uGGAAGGAAAugCACGGCGCGUGUGUa -3'
miRNA:   3'- -CUUUUUUUUugGUGUCGCGUACGCGg -5'
5792 3' -45.3 NC_001806.1 + 145025 0.79 0.82978
Target:  5'- -------cGGCC-CGGCGCAUGCGCUg -3'
miRNA:   3'- cuuuuuuuUUGGuGUCGCGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 144525 0.67 0.999937
Target:  5'- ----uAAAAGCgGgGGCGCGgccGUGCCg -3'
miRNA:   3'- cuuuuUUUUUGgUgUCGCGUa--CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 141387 0.67 0.999966
Target:  5'- ---------uUCugGGCGUGUGUGCCc -3'
miRNA:   3'- cuuuuuuuuuGGugUCGCGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 140125 0.69 0.999306
Target:  5'- aGAGGAGAcGCCA-GGCGCGgcacacgggguggGCGCCg -3'
miRNA:   3'- cUUUUUUUuUGGUgUCGCGUa------------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 139557 0.67 0.999953
Target:  5'- --cGGGAGcGCCACgAGCGCgAUGaCGUCa -3'
miRNA:   3'- cuuUUUUUuUGGUG-UCGCG-UAC-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 136357 0.69 0.999021
Target:  5'- ---cAAAAAACC-CGGgGCcgGCGCg -3'
miRNA:   3'- cuuuUUUUUUGGuGUCgCGuaCGCGg -5'
5792 3' -45.3 NC_001806.1 + 136322 0.66 0.99999
Target:  5'- --------cGCCAC-GCGCGUggagucgaaggccaGCGCCa -3'
miRNA:   3'- cuuuuuuuuUGGUGuCGCGUA--------------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 135901 0.67 0.999966
Target:  5'- cGAGGuAGGAACgCACGGUGUcguuaAUGuCGCCu -3'
miRNA:   3'- -CUUUuUUUUUG-GUGUCGCG-----UAC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.