miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 5' -49.9 NC_001806.1 + 4736 0.66 0.997811
Target:  5'- cGCGGcccCGGGcCGggGCccggucgCCGGCGGCg -3'
miRNA:   3'- -UGUCu--GCUU-GCuuUGuaa----GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 18627 0.66 0.997811
Target:  5'- uCGGACugGGACGcGAGCGUgugguccgaaCCGGCGGCc -3'
miRNA:   3'- uGUCUG--CUUGC-UUUGUAa---------GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 85995 0.66 0.997811
Target:  5'- gGCAGGCG-ACG--GCGUcucCCGGgGGCg -3'
miRNA:   3'- -UGUCUGCuUGCuuUGUAa--GGCCgCUG- -5'
5793 5' -49.9 NC_001806.1 + 2436 0.66 0.997394
Target:  5'- cGCAGGgGGccaaaGAGGCGgcccCCGGCGGCc -3'
miRNA:   3'- -UGUCUgCUug---CUUUGUaa--GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 124495 0.66 0.997394
Target:  5'- uGCGGuCGGACGccgucuCGcUCCGGCGGg -3'
miRNA:   3'- -UGUCuGCUUGCuuu---GUaAGGCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 26996 0.66 0.997394
Target:  5'- aGCGGGCcGACcGGGCucgGUUCCGGCGcCg -3'
miRNA:   3'- -UGUCUGcUUGcUUUG---UAAGGCCGCuG- -5'
5793 5' -49.9 NC_001806.1 + 5372 0.66 0.997394
Target:  5'- gGCGcGGCGAGCGucuGACGgucugucUCUGGCGGu -3'
miRNA:   3'- -UGU-CUGCUUGCu--UUGUa------AGGCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 138778 0.66 0.996912
Target:  5'- cGCAGGCGucgguaauggccGACGcAGGCGcccCCGGCGAg -3'
miRNA:   3'- -UGUCUGC------------UUGC-UUUGUaa-GGCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 102078 0.66 0.996912
Target:  5'- cACGGGCGAugGccuccgaagGGACGgcUCCGGgGAUc -3'
miRNA:   3'- -UGUCUGCUugC---------UUUGUa-AGGCCgCUG- -5'
5793 5' -49.9 NC_001806.1 + 51339 0.66 0.996359
Target:  5'- cGCGGGCguucccGAGCGgcGCAUcUUCGGCGGg -3'
miRNA:   3'- -UGUCUG------CUUGCuuUGUA-AGGCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 81355 0.66 0.996359
Target:  5'- cCAGGCGGcCGggGCGUcgCCcGCGAa -3'
miRNA:   3'- uGUCUGCUuGCuuUGUAa-GGcCGCUg -5'
5793 5' -49.9 NC_001806.1 + 76295 0.66 0.995727
Target:  5'- cGCGGAgGAgauauccgcgguGCGcAACGacCCGGCGGCg -3'
miRNA:   3'- -UGUCUgCU------------UGCuUUGUaaGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 120320 0.66 0.995727
Target:  5'- -uGGGgGGACGggGCggUCgggGGCGGCg -3'
miRNA:   3'- ugUCUgCUUGCuuUGuaAGg--CCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 94930 0.66 0.995727
Target:  5'- uCAG-CGAauuGCGAuucuGGCucgcgUCCGGCGACc -3'
miRNA:   3'- uGUCuGCU---UGCU----UUGua---AGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 100781 0.66 0.995727
Target:  5'- gGCGGccagucgccGCGccccucGCGAGACg--CCGGCGACa -3'
miRNA:   3'- -UGUC---------UGCu-----UGCUUUGuaaGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 48284 0.67 0.995009
Target:  5'- cCGGACG-ACGAcgcccccgaagaGGCGgggCUGGCGGCu -3'
miRNA:   3'- uGUCUGCuUGCU------------UUGUaa-GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 51588 0.67 0.995009
Target:  5'- cCAGGCGcugGGCGAgguggAGCugcCCGGCGGCc -3'
miRNA:   3'- uGUCUGC---UUGCU-----UUGuaaGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 81674 0.67 0.995009
Target:  5'- -aAGGCGucCGGAACGcaCUGGCGAUu -3'
miRNA:   3'- ugUCUGCuuGCUUUGUaaGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 66811 0.67 0.995009
Target:  5'- cACGGcCGAGCGggGCcggCCcgGGUGGCc -3'
miRNA:   3'- -UGUCuGCUUGCuuUGuaaGG--CCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 46505 0.67 0.994932
Target:  5'- cACAGACGAagaccucaACGAAcuccuugGCAUcaccaccaUCCGcGUGACg -3'
miRNA:   3'- -UGUCUGCU--------UGCUU-------UGUA--------AGGC-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.