miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5794 3' -53.2 NC_001806.1 + 151574 0.72 0.773355
Target:  5'- cGCGAu--GGCGG--CGGCGGCgGGCCa -3'
miRNA:   3'- -UGCUuuuUUGUCugGUCGCCGgCCGG- -5'
5794 3' -53.2 NC_001806.1 + 151524 0.66 0.962411
Target:  5'- uGCGGuuGGGACGGcGCCcgugggcccgGGCGGCCGGg- -3'
miRNA:   3'- -UGCUu-UUUUGUC-UGG----------UCGCCGGCCgg -5'
5794 3' -53.2 NC_001806.1 + 151417 0.68 0.935737
Target:  5'- aGCGAacaaGAAGGCggGGGCCcaccggcggggggcGGCGGCggggCGGCCg -3'
miRNA:   3'- -UGCU----UUUUUG--UCUGG--------------UCGCCG----GCCGG- -5'
5794 3' -53.2 NC_001806.1 + 151276 0.67 0.942025
Target:  5'- gGCGGuGGGGGCcgGGGCCggggggcggcGGCGGUgGGCCg -3'
miRNA:   3'- -UGCU-UUUUUG--UCUGG----------UCGCCGgCCGG- -5'
5794 3' -53.2 NC_001806.1 + 151193 0.68 0.937225
Target:  5'- gGCGGAGGGcgAGGCgCGGCGGaaGGCg -3'
miRNA:   3'- -UGCUUUUUugUCUG-GUCGCCggCCGg -5'
5794 3' -53.2 NC_001806.1 + 150995 0.72 0.754046
Target:  5'- cGCGGcgcgcCAGGCgGGCGGCCgaGGCCc -3'
miRNA:   3'- -UGCUuuuuuGUCUGgUCGCCGG--CCGG- -5'
5794 3' -53.2 NC_001806.1 + 150857 0.67 0.954965
Target:  5'- cCGAGuucgcCGGGCCGGCuccGCgGGCCa -3'
miRNA:   3'- uGCUUuuuu-GUCUGGUCGc--CGgCCGG- -5'
5794 3' -53.2 NC_001806.1 + 150476 0.69 0.875733
Target:  5'- cGCGGGAauugccggAAGCGGGaagGGCGGCCggGGCCg -3'
miRNA:   3'- -UGCUUU--------UUUGUCUgg-UCGCCGG--CCGG- -5'
5794 3' -53.2 NC_001806.1 + 150090 0.73 0.724272
Target:  5'- -aGggGAGGCAGGCCcaccGCgGGgCGGCCc -3'
miRNA:   3'- ugCuuUUUUGUCUGGu---CG-CCgGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 148094 0.68 0.921344
Target:  5'- cCGAGGGGggcGCuGuCCGagccGCGGCCGGCUg -3'
miRNA:   3'- uGCUUUUU---UGuCuGGU----CGCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 147694 0.68 0.932179
Target:  5'- gGCGcgGGGGCGGGCCccggaGGCGGCgCucgcacgcacggGGCCa -3'
miRNA:   3'- -UGCuuUUUUGUCUGG-----UCGCCG-G------------CCGG- -5'
5794 3' -53.2 NC_001806.1 + 147652 0.72 0.74422
Target:  5'- cGCGucc--GCgGGGCgGGCGGCCGGCUc -3'
miRNA:   3'- -UGCuuuuuUG-UCUGgUCGCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 147481 0.66 0.965793
Target:  5'- gGCGGAGggGAGCGGGgCGGCG-CCGGa- -3'
miRNA:   3'- -UGCUUU--UUUGUCUgGUCGCcGGCCgg -5'
5794 3' -53.2 NC_001806.1 + 147193 0.72 0.773355
Target:  5'- aGCGGAGGAggacGCGGccCCGGCGGCggaagaggCGGCCc -3'
miRNA:   3'- -UGCUUUUU----UGUCu-GGUCGCCG--------GCCGG- -5'
5794 3' -53.2 NC_001806.1 + 146828 0.68 0.929033
Target:  5'- uCGggGAGcAgGGugCGGCGGCuccagccggggaccgCGGCCc -3'
miRNA:   3'- uGCuuUUU-UgUCugGUCGCCG---------------GCCGG- -5'
5794 3' -53.2 NC_001806.1 + 146544 0.69 0.875733
Target:  5'- cACGGAuuGGCuGGugUAGUgGGCgCGGCCa -3'
miRNA:   3'- -UGCUUuuUUG-UCugGUCG-CCG-GCCGG- -5'
5794 3' -53.2 NC_001806.1 + 145626 0.69 0.903239
Target:  5'- aGCGAGGAuACGGAggAGUGGCgGGUg -3'
miRNA:   3'- -UGCUUUUuUGUCUggUCGCCGgCCGg -5'
5794 3' -53.2 NC_001806.1 + 145411 0.66 0.962411
Target:  5'- gGCuGGAAGACc-GCCAgGgGGUCGGCCg -3'
miRNA:   3'- -UGcUUUUUUGucUGGU-CgCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 145254 0.66 0.965793
Target:  5'- aACGAcaGGGGGCGccCCAGaggcuaaGGUCGGCCa -3'
miRNA:   3'- -UGCU--UUUUUGUcuGGUCg------CCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 144979 0.67 0.942025
Target:  5'- cCGggGccccGGCGGACCcaAGgGGCCccGGCCc -3'
miRNA:   3'- uGCuuUu---UUGUCUGG--UCgCCGG--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.