Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 100780 | 0.66 | 0.825115 |
Target: 5'- cGGcGGccaGUCGCCG-CGCCCCUc-- -3' miRNA: 3'- cCCuCCua-CAGCGGCuGCGGGGAacc -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 123014 | 0.66 | 0.856551 |
Target: 5'- uGGuGAGGcc--CGCCGACGCCUCg--- -3' miRNA: 3'- -CC-CUCCuacaGCGGCUGCGGGGaacc -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 126073 | 0.66 | 0.825115 |
Target: 5'- cGGGcGGGUGaacgaGCCGACGgCCCg--- -3' miRNA: 3'- -CCCuCCUACag---CGGCUGCgGGGaacc -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 22605 | 0.66 | 0.856551 |
Target: 5'- -cGAGGggGUCGCCGccguCGCCgCCg--- -3' miRNA: 3'- ccCUCCuaCAGCGGCu---GCGG-GGaacc -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 70931 | 0.66 | 0.848962 |
Target: 5'- cGGAGcGcgccGUgGUCGugGCgCCCUUGGu -3' miRNA: 3'- cCCUC-Cua--CAgCGGCugCG-GGGAACC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 4143 | 0.66 | 0.85202 |
Target: 5'- cGGGcGGcUGUCGCCcaGGCcgccguacagcacccGCCCCggGGg -3' miRNA: 3'- -CCCuCCuACAGCGG--CUG---------------CGGGGaaCC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 72518 | 0.66 | 0.841188 |
Target: 5'- uGGGGGAgcccugcGUCGgCGugGgCCCCcgGGa -3' miRNA: 3'- cCCUCCUa------CAGCgGCugC-GGGGaaCC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 138680 | 0.66 | 0.85202 |
Target: 5'- cGGGccuGGAUGcgacccagaggacccUCGCCuACGCCCgCaUGGa -3' miRNA: 3'- -CCCu--CCUAC---------------AGCGGcUGCGGG-GaACC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 22145 | 0.66 | 0.854294 |
Target: 5'- cGGAGGAggcgcGaCGCCGguucgaggccucggGCGCCCCggcggccgugUGGg -3' miRNA: 3'- cCCUCCUa----CaGCGGC--------------UGCGGGGa---------ACC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 19890 | 0.66 | 0.841188 |
Target: 5'- cGGuGGGuuucUGUCGUCGGagGCCCCcgGGg -3' miRNA: 3'- cCCuCCU----ACAGCGGCUg-CGGGGaaCC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 9136 | 0.66 | 0.848962 |
Target: 5'- aGGGAGGggG-CGUCGACaGCCUggaGGg -3' miRNA: 3'- -CCCUCCuaCaGCGGCUG-CGGGgaaCC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 135848 | 0.66 | 0.841188 |
Target: 5'- aGGGAGGGUacCGUCGACGgCCg--GGg -3' miRNA: 3'- -CCCUCCUAcaGCGGCUGCgGGgaaCC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 77391 | 0.67 | 0.799792 |
Target: 5'- cGGGcgcGGcgGccgCGCCcGCGCCCCUgcucgUGGa -3' miRNA: 3'- -CCCu--CCuaCa--GCGGcUGCGGGGA-----ACC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 36739 | 0.67 | 0.799792 |
Target: 5'- aGGGGGGAUG-CGCCcgGGCgggaaGCUCCUaagGGc -3' miRNA: 3'- -CCCUCCUACaGCGG--CUG-----CGGGGAa--CC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 2861 | 0.67 | 0.791057 |
Target: 5'- gGGGAGGggGgCGCgGGCGUCCgagccgGGg -3' miRNA: 3'- -CCCUCCuaCaGCGgCUGCGGGgaa---CC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 75062 | 0.67 | 0.790176 |
Target: 5'- uGGuGG-UGcugaagaaccuguUCGCCGACGCCCCa--- -3' miRNA: 3'- cCCuCCuAC-------------AGCGGCUGCGGGGaacc -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 6669 | 0.67 | 0.799792 |
Target: 5'- gGGGGGGAgcaUGUCGugGgCCCU-GGa -3' miRNA: 3'- -CCCUCCUacaGCGGCugCgGGGAaCC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 11397 | 0.67 | 0.799792 |
Target: 5'- aGGGAGGGcauuggcgugcgUGaCGaCCGGCGCCgggaUUUGGg -3' miRNA: 3'- -CCCUCCU------------ACaGC-GGCUGCGGg---GAACC- -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 148126 | 0.67 | 0.782189 |
Target: 5'- uGGGGGGcUG-CGUgaGACGCCCCg--- -3' miRNA: 3'- -CCCUCCuACaGCGg-CUGCGGGGaacc -5' |
|||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 90241 | 0.67 | 0.773194 |
Target: 5'- cGGcGAuuccGAcGUCGCCGugGCGCCCCUggucgUGGg -3' miRNA: 3'- -CC-CUc---CUaCAGCGGC--UGCGGGGA-----ACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home