Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5794 | 5' | -58.5 | NC_001806.1 | + | 123014 | 0.66 | 0.856551 |
Target: 5'- uGGuGAGGcc--CGCCGACGCCUCg--- -3' miRNA: 3'- -CC-CUCCuacaGCGGCUGCGGGGaacc -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 20336 | 0.72 | 0.521467 |
Target: 5'- gGGGGGGcgGcaagGCgGGCGgCCCUUGGg -3' miRNA: 3'- -CCCUCCuaCag--CGgCUGCgGGGAACC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 26834 | 0.71 | 0.540577 |
Target: 5'- gGGGAGGggG-CGCCGGaGCCCCc--- -3' miRNA: 3'- -CCCUCCuaCaGCGGCUgCGGGGaacc -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 37842 | 0.71 | 0.540577 |
Target: 5'- gGGGGGGGUGcUUGgCGcACGCCCCg--- -3' miRNA: 3'- -CCCUCCUAC-AGCgGC-UGCGGGGaacc -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 24801 | 0.71 | 0.559916 |
Target: 5'- cGGGGGcccUGcCGCCGGCGCCgCCcgGGa -3' miRNA: 3'- cCCUCCu--ACaGCGGCUGCGG-GGaaCC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 4379 | 0.71 | 0.579442 |
Target: 5'- cGGGGGuccUCGCCGcCGCCCggggCUUGGg -3' miRNA: 3'- cCCUCCuacAGCGGCuGCGGG----GAACC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 50467 | 0.7 | 0.628764 |
Target: 5'- cGGGAGGAgcUGUuucgCGCCc-UGCCCCUgGGa -3' miRNA: 3'- -CCCUCCU--ACA----GCGGcuGCGGGGAaCC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 151240 | 0.7 | 0.628764 |
Target: 5'- uGGGAGGG-GUCaGCCc-CGCCCCccGGg -3' miRNA: 3'- -CCCUCCUaCAG-CGGcuGCGGGGaaCC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 148157 | 0.7 | 0.638663 |
Target: 5'- cGGGGGGcg--CGgCGGCGCCUCUgcgUGGg -3' miRNA: 3'- -CCCUCCuacaGCgGCUGCGGGGA---ACC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 68952 | 0.72 | 0.512011 |
Target: 5'- cGGGGGGcugugGUC-CCGcCGCCCCUguUGGc -3' miRNA: 3'- -CCCUCCua---CAGcGGCuGCGGGGA--ACC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 77950 | 0.72 | 0.493317 |
Target: 5'- uGGGGGGGUGaCG-CGGCgGCCCCggGGc -3' miRNA: 3'- -CCCUCCUACaGCgGCUG-CGGGGaaCC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 25408 | 0.73 | 0.478591 |
Target: 5'- cGGGAGGGggcgaggggcgguggUGgugCGCgGGCGCCCCcggaggguUUGGa -3' miRNA: 3'- -CCCUCCU---------------ACa--GCGgCUGCGGGG--------AACC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 147348 | 0.81 | 0.154456 |
Target: 5'- aGGGGGGGUG-CGUCGcCGCCCuCUUGGc -3' miRNA: 3'- -CCCUCCUACaGCGGCuGCGGG-GAACC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 122024 | 0.76 | 0.299815 |
Target: 5'- uGGGuGGGUGUgGgucgggucgacCCGGgGCCCCUUGGg -3' miRNA: 3'- -CCCuCCUACAgC-----------GGCUgCGGGGAACC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 43659 | 0.76 | 0.327608 |
Target: 5'- uGGAGGAUGuggccaUCGCCGAacgGgCCCUUGGc -3' miRNA: 3'- cCCUCCUAC------AGCGGCUg--CgGGGAACC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 130976 | 0.75 | 0.354215 |
Target: 5'- cGGAGGAagccgucaagcgcGUCGCCGACGCCCUa--- -3' miRNA: 3'- cCCUCCUa------------CAGCGGCUGCGGGGaacc -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 38139 | 0.74 | 0.388752 |
Target: 5'- cGGGGGAgcaagacgGUCGCCGG-GCCCCgaGGc -3' miRNA: 3'- cCCUCCUa-------CAGCGGCUgCGGGGaaCC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 39831 | 0.74 | 0.396904 |
Target: 5'- uGGGGGGGUG-CGUCGGgGCCCCc--- -3' miRNA: 3'- -CCCUCCUACaGCGGCUgCGGGGaacc -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 33654 | 0.73 | 0.448042 |
Target: 5'- gGGGGGGGUGUCGCgGGcCGUCUgcUGGc -3' miRNA: 3'- -CCCUCCUACAGCGgCU-GCGGGgaACC- -5' |
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5794 | 5' | -58.5 | NC_001806.1 | + | 54119 | 0.73 | 0.456916 |
Target: 5'- uGGGGGGUGUC-CCGGgGCCCag-GGg -3' miRNA: 3'- cCCUCCUACAGcGGCUgCGGGgaaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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