miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5794 5' -58.5 NC_001806.1 + 33324 1.11 0.001552
Target:  5'- gGGGAGGAUGUCGCCGACGCCCCUUGGc -3'
miRNA:   3'- -CCCUCCUACAGCGGCUGCGGGGAACC- -5'
5794 5' -58.5 NC_001806.1 + 147348 0.81 0.154456
Target:  5'- aGGGGGGGUG-CGUCGcCGCCCuCUUGGc -3'
miRNA:   3'- -CCCUCCUACaGCGGCuGCGGG-GAACC- -5'
5794 5' -58.5 NC_001806.1 + 122024 0.76 0.299815
Target:  5'- uGGGuGGGUGUgGgucgggucgacCCGGgGCCCCUUGGg -3'
miRNA:   3'- -CCCuCCUACAgC-----------GGCUgCGGGGAACC- -5'
5794 5' -58.5 NC_001806.1 + 43659 0.76 0.327608
Target:  5'- uGGAGGAUGuggccaUCGCCGAacgGgCCCUUGGc -3'
miRNA:   3'- cCCUCCUAC------AGCGGCUg--CgGGGAACC- -5'
5794 5' -58.5 NC_001806.1 + 130976 0.75 0.354215
Target:  5'- cGGAGGAagccgucaagcgcGUCGCCGACGCCCUa--- -3'
miRNA:   3'- cCCUCCUa------------CAGCGGCUGCGGGGaacc -5'
5794 5' -58.5 NC_001806.1 + 38139 0.74 0.388752
Target:  5'- cGGGGGAgcaagacgGUCGCCGG-GCCCCgaGGc -3'
miRNA:   3'- cCCUCCUa-------CAGCGGCUgCGGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 39831 0.74 0.396904
Target:  5'- uGGGGGGGUG-CGUCGGgGCCCCc--- -3'
miRNA:   3'- -CCCUCCUACaGCGGCUgCGGGGaacc -5'
5794 5' -58.5 NC_001806.1 + 33654 0.73 0.448042
Target:  5'- gGGGGGGGUGUCGCgGGcCGUCUgcUGGc -3'
miRNA:   3'- -CCCUCCUACAGCGgCU-GCGGGgaACC- -5'
5794 5' -58.5 NC_001806.1 + 54119 0.73 0.456916
Target:  5'- uGGGGGGUGUC-CCGGgGCCCag-GGg -3'
miRNA:   3'- cCCUCCUACAGcGGCUgCGGGgaaCC- -5'
5794 5' -58.5 NC_001806.1 + 25408 0.73 0.478591
Target:  5'- cGGGAGGGggcgaggggcgguggUGgugCGCgGGCGCCCCcggaggguUUGGa -3'
miRNA:   3'- -CCCUCCU---------------ACa--GCGgCUGCGGGG--------AACC- -5'
5794 5' -58.5 NC_001806.1 + 77950 0.72 0.493317
Target:  5'- uGGGGGGGUGaCG-CGGCgGCCCCggGGc -3'
miRNA:   3'- -CCCUCCUACaGCgGCUG-CGGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 68952 0.72 0.512011
Target:  5'- cGGGGGGcugugGUC-CCGcCGCCCCUguUGGc -3'
miRNA:   3'- -CCCUCCua---CAGcGGCuGCGGGGA--ACC- -5'
5794 5' -58.5 NC_001806.1 + 20336 0.72 0.521467
Target:  5'- gGGGGGGcgGcaagGCgGGCGgCCCUUGGg -3'
miRNA:   3'- -CCCUCCuaCag--CGgCUGCgGGGAACC- -5'
5794 5' -58.5 NC_001806.1 + 26834 0.71 0.540577
Target:  5'- gGGGAGGggG-CGCCGGaGCCCCc--- -3'
miRNA:   3'- -CCCUCCuaCaGCGGCUgCGGGGaacc -5'
5794 5' -58.5 NC_001806.1 + 37842 0.71 0.540577
Target:  5'- gGGGGGGGUGcUUGgCGcACGCCCCg--- -3'
miRNA:   3'- -CCCUCCUAC-AGCgGC-UGCGGGGaacc -5'
5794 5' -58.5 NC_001806.1 + 24801 0.71 0.559916
Target:  5'- cGGGGGcccUGcCGCCGGCGCCgCCcgGGa -3'
miRNA:   3'- cCCUCCu--ACaGCGGCUGCGG-GGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 4379 0.71 0.579442
Target:  5'- cGGGGGuccUCGCCGcCGCCCggggCUUGGg -3'
miRNA:   3'- cCCUCCuacAGCGGCuGCGGG----GAACC- -5'
5794 5' -58.5 NC_001806.1 + 50467 0.7 0.628764
Target:  5'- cGGGAGGAgcUGUuucgCGCCc-UGCCCCUgGGa -3'
miRNA:   3'- -CCCUCCU--ACA----GCGGcuGCGGGGAaCC- -5'
5794 5' -58.5 NC_001806.1 + 151240 0.7 0.628764
Target:  5'- uGGGAGGG-GUCaGCCc-CGCCCCccGGg -3'
miRNA:   3'- -CCCUCCUaCAG-CGGcuGCGGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 148157 0.7 0.638663
Target:  5'- cGGGGGGcg--CGgCGGCGCCUCUgcgUGGg -3'
miRNA:   3'- -CCCUCCuacaGCgGCUGCGGGGA---ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.