miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5794 5' -58.5 NC_001806.1 + 2661 0.69 0.707396
Target:  5'- aGGGcGGcgGcCGCgGGCGCCgCCgugUGGc -3'
miRNA:   3'- -CCCuCCuaCaGCGgCUGCGG-GGa--ACC- -5'
5794 5' -58.5 NC_001806.1 + 2861 0.67 0.791057
Target:  5'- gGGGAGGggGgCGCgGGCGUCCgagccgGGg -3'
miRNA:   3'- -CCCUCCuaCaGCGgCUGCGGGgaa---CC- -5'
5794 5' -58.5 NC_001806.1 + 3545 0.67 0.816828
Target:  5'- gGGGAGGcgGgcgCGgCGGacagcCGCCCCagGGc -3'
miRNA:   3'- -CCCUCCuaCa--GCgGCU-----GCGGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 4143 0.66 0.85202
Target:  5'- cGGGcGGcUGUCGCCcaGGCcgccguacagcacccGCCCCggGGg -3'
miRNA:   3'- -CCCuCCuACAGCGG--CUG---------------CGGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 4379 0.71 0.579442
Target:  5'- cGGGGGuccUCGCCGcCGCCCggggCUUGGg -3'
miRNA:   3'- cCCUCCuacAGCGGCuGCGGG----GAACC- -5'
5794 5' -58.5 NC_001806.1 + 5675 0.67 0.773194
Target:  5'- aGGGcGGGUGgguccgCGCCc-CGCCCCgcaUGGc -3'
miRNA:   3'- -CCCuCCUACa-----GCGGcuGCGGGGa--ACC- -5'
5794 5' -58.5 NC_001806.1 + 6669 0.67 0.799792
Target:  5'- gGGGGGGAgcaUGUCGugGgCCCU-GGa -3'
miRNA:   3'- -CCCUCCUacaGCGGCugCgGGGAaCC- -5'
5794 5' -58.5 NC_001806.1 + 9136 0.66 0.848962
Target:  5'- aGGGAGGggG-CGUCGACaGCCUggaGGg -3'
miRNA:   3'- -CCCUCCuaCaGCGGCUG-CGGGgaaCC- -5'
5794 5' -58.5 NC_001806.1 + 11397 0.67 0.799792
Target:  5'- aGGGAGGGcauuggcgugcgUGaCGaCCGGCGCCgggaUUUGGg -3'
miRNA:   3'- -CCCUCCU------------ACaGC-GGCUGCGGg---GAACC- -5'
5794 5' -58.5 NC_001806.1 + 13159 0.69 0.678136
Target:  5'- cGGGGGGAUG-CGCagcgggagGGCGUacuuacaggagCCCUUGGc -3'
miRNA:   3'- -CCCUCCUACaGCGg-------CUGCG-----------GGGAACC- -5'
5794 5' -58.5 NC_001806.1 + 16622 0.7 0.648557
Target:  5'- gGGGAgGGAUGUgGUCGuugGCCCCgauaagGGg -3'
miRNA:   3'- -CCCU-CCUACAgCGGCug-CGGGGaa----CC- -5'
5794 5' -58.5 NC_001806.1 + 19890 0.66 0.841188
Target:  5'- cGGuGGGuuucUGUCGUCGGagGCCCCcgGGg -3'
miRNA:   3'- cCCuCCU----ACAGCGGCUg-CGGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 20336 0.72 0.521467
Target:  5'- gGGGGGGcgGcaagGCgGGCGgCCCUUGGg -3'
miRNA:   3'- -CCCUCCuaCag--CGgCUGCgGGGAACC- -5'
5794 5' -58.5 NC_001806.1 + 22145 0.66 0.854294
Target:  5'- cGGAGGAggcgcGaCGCCGguucgaggccucggGCGCCCCggcggccgugUGGg -3'
miRNA:   3'- cCCUCCUa----CaGCGGC--------------UGCGGGGa---------ACC- -5'
5794 5' -58.5 NC_001806.1 + 22605 0.66 0.856551
Target:  5'- -cGAGGggGUCGCCGccguCGCCgCCg--- -3'
miRNA:   3'- ccCUCCuaCAGCGGCu---GCGG-GGaacc -5'
5794 5' -58.5 NC_001806.1 + 24719 0.68 0.764081
Target:  5'- cGGAGGGacuuuUG-CGCCcGCGCCCUgcUGGa -3'
miRNA:   3'- cCCUCCU-----ACaGCGGcUGCGGGGa-ACC- -5'
5794 5' -58.5 NC_001806.1 + 24801 0.71 0.559916
Target:  5'- cGGGGGcccUGcCGCCGGCGCCgCCcgGGa -3'
miRNA:   3'- cCCUCCu--ACaGCGGCUGCGG-GGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 25408 0.73 0.478591
Target:  5'- cGGGAGGGggcgaggggcgguggUGgugCGCgGGCGCCCCcggaggguUUGGa -3'
miRNA:   3'- -CCCUCCU---------------ACa--GCGgCUGCGGGG--------AACC- -5'
5794 5' -58.5 NC_001806.1 + 26834 0.71 0.540577
Target:  5'- gGGGAGGggG-CGCCGGaGCCCCc--- -3'
miRNA:   3'- -CCCUCCuaCaGCGGCUgCGGGGaacc -5'
5794 5' -58.5 NC_001806.1 + 27902 0.67 0.773194
Target:  5'- uGGGGGAaucGUCaCUGcCGCCCCUuUGGg -3'
miRNA:   3'- cCCUCCUa--CAGcGGCuGCGGGGA-ACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.