miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 3' -61.1 NC_001806.1 + 151554 0.7 0.460506
Target:  5'- --cGGCCggggGCgGCGGgGGCCG-CGAUGg -3'
miRNA:   3'- cuaCCGG----CGgCGCUgCCGGCuGCUAC- -5'
5803 3' -61.1 NC_001806.1 + 150980 0.7 0.44286
Target:  5'- cGcgGGCCcacgaGCCGCGGCGcGCCaGGCGGg- -3'
miRNA:   3'- -CuaCCGG-----CGGCGCUGC-CGG-CUGCUac -5'
5803 3' -61.1 NC_001806.1 + 150671 0.77 0.186031
Target:  5'- --gGGCCccGCCGCGcugGCGGCCGcCGAUGg -3'
miRNA:   3'- cuaCCGG--CGGCGC---UGCCGGCuGCUAC- -5'
5803 3' -61.1 NC_001806.1 + 147813 0.66 0.690738
Target:  5'- cAUGGgCGCCGCgGGgGGCCuGugGGg- -3'
miRNA:   3'- cUACCgGCGGCG-CUgCCGG-CugCUac -5'
5803 3' -61.1 NC_001806.1 + 144958 0.67 0.628931
Target:  5'- --cGGCCcCCGUGGCGGCCcggcccggggccccGGCGGa- -3'
miRNA:   3'- cuaCCGGcGGCGCUGCCGG--------------CUGCUac -5'
5803 3' -61.1 NC_001806.1 + 144793 0.67 0.651581
Target:  5'- --gGGCgaagGCCGCGuACGGCCcggGACGAg- -3'
miRNA:   3'- cuaCCGg---CGGCGC-UGCCGG---CUGCUac -5'
5803 3' -61.1 NC_001806.1 + 144283 0.7 0.469467
Target:  5'- uGUGGCCGCgggccaGCaGACGGCCcGCGAc- -3'
miRNA:   3'- cUACCGGCGg-----CG-CUGCCGGcUGCUac -5'
5803 3' -61.1 NC_001806.1 + 143122 0.69 0.524964
Target:  5'- cGUGGCUGCCGgGAgGGgCCG-CgGAUGg -3'
miRNA:   3'- cUACCGGCGGCgCUgCC-GGCuG-CUAC- -5'
5803 3' -61.1 NC_001806.1 + 139224 0.71 0.408751
Target:  5'- --aGGCgGCaCGCGACGGCCaACG-UGg -3'
miRNA:   3'- cuaCCGgCG-GCGCUGCCGGcUGCuAC- -5'
5803 3' -61.1 NC_001806.1 + 136989 0.7 0.451636
Target:  5'- --cGGUCaUgGCGGCGGCCGGCGggGa -3'
miRNA:   3'- cuaCCGGcGgCGCUGCCGGCUGCuaC- -5'
5803 3' -61.1 NC_001806.1 + 136368 0.66 0.719657
Target:  5'- --gGGCCGgCGCGcuccGCGGCCuccGCGAc- -3'
miRNA:   3'- cuaCCGGCgGCGC----UGCCGGc--UGCUac -5'
5803 3' -61.1 NC_001806.1 + 135135 0.66 0.710076
Target:  5'- -cUGGaCGuCCGCGACgaacagGGCCG-CGAUGu -3'
miRNA:   3'- cuACCgGC-GGCGCUG------CCGGCuGCUAC- -5'
5803 3' -61.1 NC_001806.1 + 134974 0.78 0.145701
Target:  5'- --cGGCCGUCGCGGCGGCCauccCGGUGc -3'
miRNA:   3'- cuaCCGGCGGCGCUGCCGGcu--GCUAC- -5'
5803 3' -61.1 NC_001806.1 + 134932 0.71 0.408751
Target:  5'- cGAUGGCCuGCUugaggaugGUGGCGGCCGACc--- -3'
miRNA:   3'- -CUACCGG-CGG--------CGCUGCCGGCUGcuac -5'
5803 3' -61.1 NC_001806.1 + 134902 0.66 0.719657
Target:  5'- --cGGCCGCCuCGACcaGGCUG-CGGUc -3'
miRNA:   3'- cuaCCGGCGGcGCUG--CCGGCuGCUAc -5'
5803 3' -61.1 NC_001806.1 + 133235 0.67 0.641737
Target:  5'- gGcgGGCCaUCGaGACGGCCGugGGa- -3'
miRNA:   3'- -CuaCCGGcGGCgCUGCCGGCugCUac -5'
5803 3' -61.1 NC_001806.1 + 133089 0.66 0.678067
Target:  5'- aAUGGCCGCCgucuGCcugcagaucgaggaGACGGCCagcuCGGUGa -3'
miRNA:   3'- cUACCGGCGG----CG--------------CUGCCGGcu--GCUAC- -5'
5803 3' -61.1 NC_001806.1 + 131868 0.76 0.204756
Target:  5'- --aGGCCGUCGUGGCGGCCGcccgcgccGCGAc- -3'
miRNA:   3'- cuaCCGGCGGCGCUGCCGGC--------UGCUac -5'
5803 3' -61.1 NC_001806.1 + 130818 0.7 0.440246
Target:  5'- cAUGGCCGCgCGCcugcauugggacucGGCGGCCGGgGGa- -3'
miRNA:   3'- cUACCGGCG-GCG--------------CUGCCGGCUgCUac -5'
5803 3' -61.1 NC_001806.1 + 130500 0.66 0.710076
Target:  5'- --aGGCCGCCGaGACGGagGA-GGUGg -3'
miRNA:   3'- cuaCCGGCGGCgCUGCCggCUgCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.