miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 5' -58.7 NC_001806.1 + 94472 0.66 0.780808
Target:  5'- aCUGCCACCucaucacccCCUCGcGCGGcGCCAc -3'
miRNA:   3'- cGGCGGUGGua-------GGAGUuCGUC-CGGUa -5'
5803 5' -58.7 NC_001806.1 + 73120 0.66 0.780808
Target:  5'- gGCCGCCGgUcgCCg-AGGCGGGCgAg -3'
miRNA:   3'- -CGGCGGUgGuaGGagUUCGUCCGgUa -5'
5803 5' -58.7 NC_001806.1 + 98552 0.66 0.771498
Target:  5'- -aCGCCGCCAUgUUU--GCGGGCCu- -3'
miRNA:   3'- cgGCGGUGGUAgGAGuuCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 33349 0.66 0.771498
Target:  5'- gGCCGCC-CCggCUgCAGGgGGGCCc- -3'
miRNA:   3'- -CGGCGGuGGuaGGaGUUCgUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 33133 0.66 0.762065
Target:  5'- aCCGCCGCgGUcgggggccCCUCGuccCGGGCCGUa -3'
miRNA:   3'- cGGCGGUGgUA--------GGAGUuc-GUCCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 54883 0.66 0.762065
Target:  5'- gGCCGCCGCag-CCUCGG--AGGUCAc -3'
miRNA:   3'- -CGGCGGUGguaGGAGUUcgUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 144207 0.66 0.762065
Target:  5'- aGCCGCCGCCGacaCCgcaGAGCcGGCgCGc -3'
miRNA:   3'- -CGGCGGUGGUa--GGag-UUCGuCCG-GUa -5'
5803 5' -58.7 NC_001806.1 + 3911 0.66 0.762065
Target:  5'- cGCgCGgCGCCcgagAUCCggAAGCAGGCCu- -3'
miRNA:   3'- -CG-GCgGUGG----UAGGagUUCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 5919 0.66 0.762065
Target:  5'- uGCCGCCcccCCAUuggCCggCGGGCGGGaCCGc -3'
miRNA:   3'- -CGGCGGu--GGUA---GGa-GUUCGUCC-GGUa -5'
5803 5' -58.7 NC_001806.1 + 30490 0.66 0.752517
Target:  5'- uCCGCCGCC-UCUgUCGAGCAGGaggCGg -3'
miRNA:   3'- cGGCGGUGGuAGG-AGUUCGUCCg--GUa -5'
5803 5' -58.7 NC_001806.1 + 12784 0.66 0.752517
Target:  5'- uGCCGcCCACCGcgCCggCGAuCAGGCCc- -3'
miRNA:   3'- -CGGC-GGUGGUa-GGa-GUUcGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 83508 0.66 0.742863
Target:  5'- cGCCGCUAgCAUCUUCGu---GGCCGc -3'
miRNA:   3'- -CGGCGGUgGUAGGAGUucguCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 4325 0.66 0.742863
Target:  5'- gGCCgGCCACCG-CCgc--GCGGGCCc- -3'
miRNA:   3'- -CGG-CGGUGGUaGGaguuCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 8819 0.66 0.742863
Target:  5'- gGCCGCC-UCGUCUUCGcuuuccgaguAGUAGGCUu- -3'
miRNA:   3'- -CGGCGGuGGUAGGAGU----------UCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 1386 0.66 0.742863
Target:  5'- cGCCGCCGCCAgcacggugCCgcugcGGCccguGGCCGa -3'
miRNA:   3'- -CGGCGGUGGUa-------GGagu--UCGu---CCGGUa -5'
5803 5' -58.7 NC_001806.1 + 80145 0.66 0.742863
Target:  5'- aGCCGaCC-UCAUCCUCucccGCAGGUCc- -3'
miRNA:   3'- -CGGC-GGuGGUAGGAGuu--CGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 22818 0.66 0.742863
Target:  5'- gGCCGCCugCcgcgggAUCCUgGAggcGCuGGCCGa -3'
miRNA:   3'- -CGGCGGugG------UAGGAgUU---CGuCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 112112 0.66 0.739948
Target:  5'- aGCuCGCUcgcaacguccagGCCGUCCUCGgggcguuugagcgcGGCAcGGCCGa -3'
miRNA:   3'- -CG-GCGG------------UGGUAGGAGU--------------UCGU-CCGGUa -5'
5803 5' -58.7 NC_001806.1 + 21600 0.66 0.733113
Target:  5'- aGCCGCCGCggagaCGUCgUCAcggccgguGGC-GGCCAUc -3'
miRNA:   3'- -CGGCGGUG-----GUAGgAGU--------UCGuCCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 49432 0.66 0.733113
Target:  5'- uCC-CCGCgGUCCUCc-GCAGGCCc- -3'
miRNA:   3'- cGGcGGUGgUAGGAGuuCGUCCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.