miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5824 5' -62 NC_001806.1 + 76926 0.65 0.714264
Target:  5'- -cCGagGCgGAGUGGGACGAgguauggggucgcuUCgGCCg -3'
miRNA:   3'- caGCagCGgCUCGCCCUGCU--------------GGgCGG- -5'
5824 5' -62 NC_001806.1 + 72335 0.65 0.714264
Target:  5'- -aCGUaCGgUGGGCGGGAgccaugguguuuuuCGugCCGUCg -3'
miRNA:   3'- caGCA-GCgGCUCGCCCU--------------GCugGGCGG- -5'
5824 5' -62 NC_001806.1 + 95423 0.66 0.707656
Target:  5'- -cCGUCGCCGcgGGCccggGGGGCaggGGCCCGagaCg -3'
miRNA:   3'- caGCAGCGGC--UCG----CCCUG---CUGGGCg--G- -5'
5824 5' -62 NC_001806.1 + 3851 0.66 0.707656
Target:  5'- -gCGUaGCCcaGGUGGGgcACGGCCCGCg -3'
miRNA:   3'- caGCAgCGGc-UCGCCC--UGCUGGGCGg -5'
5824 5' -62 NC_001806.1 + 26982 0.66 0.704815
Target:  5'- cUCGUgGgCCcgcGAGCGGGcCGACCgggcucgguuccggCGCCg -3'
miRNA:   3'- cAGCAgC-GG---CUCGCCCuGCUGG--------------GCGG- -5'
5824 5' -62 NC_001806.1 + 90252 0.66 0.698168
Target:  5'- -aCGUCGCCGuGGCGccccuggucGugGGCCUGaCCg -3'
miRNA:   3'- caGCAGCGGC-UCGCc--------CugCUGGGC-GG- -5'
5824 5' -62 NC_001806.1 + 95717 0.66 0.698168
Target:  5'- cUCGgCGCCGGGCGuGuuCGACgCGCa -3'
miRNA:   3'- cAGCaGCGGCUCGC-CcuGCUGgGCGg -5'
5824 5' -62 NC_001806.1 + 151270 0.66 0.688631
Target:  5'- ----aCGCCGGGCGGuGGgGGCCgggGCCg -3'
miRNA:   3'- cagcaGCGGCUCGCC-CUgCUGGg--CGG- -5'
5824 5' -62 NC_001806.1 + 27826 0.66 0.688631
Target:  5'- uUUGggggCGCCGGGUugguccccgGGGACGgGgCCGCCc -3'
miRNA:   3'- cAGCa---GCGGCUCG---------CCCUGC-UgGGCGG- -5'
5824 5' -62 NC_001806.1 + 44277 0.66 0.679051
Target:  5'- -gCGUcCGCCcccgcaaccagGAGCuGGGCGACCuuggCGCCg -3'
miRNA:   3'- caGCA-GCGG-----------CUCGcCCUGCUGG----GCGG- -5'
5824 5' -62 NC_001806.1 + 23916 0.66 0.679051
Target:  5'- -cCGcUGCCGGGCGaGGACcuGGCCgGCg -3'
miRNA:   3'- caGCaGCGGCUCGC-CCUG--CUGGgCGg -5'
5824 5' -62 NC_001806.1 + 33095 0.66 0.67617
Target:  5'- -gCGUCGCgugccggCGAGCGGGucCGGacggggcccggaCCGCCg -3'
miRNA:   3'- caGCAGCG-------GCUCGCCCu-GCUg-----------GGCGG- -5'
5824 5' -62 NC_001806.1 + 111547 0.66 0.669437
Target:  5'- --gGUgGCCGGGCguugGGGugGAUCUuaGCCu -3'
miRNA:   3'- cagCAgCGGCUCG----CCCugCUGGG--CGG- -5'
5824 5' -62 NC_001806.1 + 150262 0.66 0.669437
Target:  5'- cGUCGgUGCCc--CGGGGCuuCCCGCCu -3'
miRNA:   3'- -CAGCaGCGGcucGCCCUGcuGGGCGG- -5'
5824 5' -62 NC_001806.1 + 77052 0.66 0.665584
Target:  5'- uGUCGgggcugcgaGCCcAGCGGGACuacgagcgccuuCCCGCCa -3'
miRNA:   3'- -CAGCag-------CGGcUCGCCCUGcu----------GGGCGG- -5'
5824 5' -62 NC_001806.1 + 31381 0.66 0.659796
Target:  5'- gGUCGggCGCUGGGUGGucucUGGCCgCGCCc -3'
miRNA:   3'- -CAGCa-GCGGCUCGCCcu--GCUGG-GCGG- -5'
5824 5' -62 NC_001806.1 + 6288 0.66 0.659796
Target:  5'- ----aCGCgGAcGCGGGGgggaaaGACCCGCCc -3'
miRNA:   3'- cagcaGCGgCU-CGCCCUg-----CUGGGCGG- -5'
5824 5' -62 NC_001806.1 + 116169 0.67 0.650136
Target:  5'- -gCGcugCGaaGGGCGGGugGuauuCCUGCCg -3'
miRNA:   3'- caGCa--GCggCUCGCCCugCu---GGGCGG- -5'
5824 5' -62 NC_001806.1 + 112407 0.67 0.640462
Target:  5'- -cCGUCugacgcauGCCGAcacGCGcGGGCGGCCgGUCg -3'
miRNA:   3'- caGCAG--------CGGCU---CGC-CCUGCUGGgCGG- -5'
5824 5' -62 NC_001806.1 + 108918 0.67 0.640462
Target:  5'- --gGUCGUCGGGCcgaGGGACGuACagGCCg -3'
miRNA:   3'- cagCAGCGGCUCG---CCCUGC-UGggCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.