miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5827 3' -61.7 NC_001806.1 + 83794 0.65 0.696726
Target:  5'- aCCUugGCcuccgggggcgaggAGGGgGCGGgGUCGgCGCGg -3'
miRNA:   3'- -GGGugCG--------------UUCCgCGUCgCGGCgGUGC- -5'
5827 3' -61.7 NC_001806.1 + 2409 0.66 0.689954
Target:  5'- gCCAUGC--GGCGCAGCGggcCCGaggCGCGc -3'
miRNA:   3'- gGGUGCGuuCCGCGUCGC---GGCg--GUGC- -5'
5827 3' -61.7 NC_001806.1 + 91824 0.66 0.689954
Target:  5'- aUCAUGCAGGagacguaccGCGCGGCGaCCGagCGCGu -3'
miRNA:   3'- gGGUGCGUUC---------CGCGUCGC-GGCg-GUGC- -5'
5827 3' -61.7 NC_001806.1 + 46632 0.66 0.689954
Target:  5'- gCCACgGCGacucgaGGGCGUucuGCGgCGUCGCGc -3'
miRNA:   3'- gGGUG-CGU------UCCGCGu--CGCgGCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 3161 0.66 0.689954
Target:  5'- aCCAgGCucacGGCGC-GCacgGCgGCCACGg -3'
miRNA:   3'- gGGUgCGuu--CCGCGuCG---CGgCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 69103 0.66 0.689954
Target:  5'- gCCCGCGCucGGC-CuguGCGCCcCCGgGg -3'
miRNA:   3'- -GGGUGCGuuCCGcGu--CGCGGcGGUgC- -5'
5827 3' -61.7 NC_001806.1 + 75707 0.66 0.689954
Target:  5'- gCCACGa---GCGCuGgGCCGCCgACGu -3'
miRNA:   3'- gGGUGCguucCGCGuCgCGGCGG-UGC- -5'
5827 3' -61.7 NC_001806.1 + 44283 0.66 0.689954
Target:  5'- gCCCcCGCAaccaggagcuGGGCGaccuuGGCGCCgGCCuCGa -3'
miRNA:   3'- -GGGuGCGU----------UCCGCg----UCGCGG-CGGuGC- -5'
5827 3' -61.7 NC_001806.1 + 1383 0.66 0.689954
Target:  5'- cCCCGcCGCcgccaGCaCGGUGCCGCUGCGg -3'
miRNA:   3'- -GGGU-GCGuuc--CGcGUCGCGGCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 7788 0.66 0.689954
Target:  5'- cCCCGCccccgGCuacAGGgGCcauguuGgGCCGCCACGc -3'
miRNA:   3'- -GGGUG-----CGu--UCCgCGu-----CgCGGCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 95168 0.66 0.688985
Target:  5'- aCCCgACGaucagauCGAGGCGCucauccGCGCgUGCUACGa -3'
miRNA:   3'- -GGG-UGC-------GUUCCGCGu-----CGCG-GCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 63787 0.66 0.688985
Target:  5'- -aCACGCAcgcgccggucGGacGCGCGcucucuuuguuguGCGCCGCCACc -3'
miRNA:   3'- ggGUGCGU----------UC--CGCGU-------------CGCGGCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 95289 0.66 0.680243
Target:  5'- -gCGCGCAugggggcgggGGGCGCGGCGgacgCGCCcaaggGCGg -3'
miRNA:   3'- ggGUGCGU----------UCCGCGUCGCg---GCGG-----UGC- -5'
5827 3' -61.7 NC_001806.1 + 136323 0.66 0.680243
Target:  5'- gCCACGCGcguggagucgaAGGC-CAGCGCCaGCuCAa- -3'
miRNA:   3'- gGGUGCGU-----------UCCGcGUCGCGG-CG-GUgc -5'
5827 3' -61.7 NC_001806.1 + 23715 0.66 0.680243
Target:  5'- gCCGCGCGGuGCGCcgGGCccgcccCCGCCGCc -3'
miRNA:   3'- gGGUGCGUUcCGCG--UCGc-----GGCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 59172 0.66 0.680243
Target:  5'- --gACGCGgaggGGGCGUA-UGCCGCUGCGa -3'
miRNA:   3'- gggUGCGU----UCCGCGUcGCGGCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 15740 0.66 0.680243
Target:  5'- gCCGCGCGGGaGCgGUAGCGCgaggugaGgCGCGa -3'
miRNA:   3'- gGGUGCGUUC-CG-CGUCGCGg------CgGUGC- -5'
5827 3' -61.7 NC_001806.1 + 24220 0.66 0.680243
Target:  5'- gCCCGC-CGacGGGCccGCGGUGUCGCgGCa -3'
miRNA:   3'- -GGGUGcGU--UCCG--CGUCGCGGCGgUGc -5'
5827 3' -61.7 NC_001806.1 + 148012 0.66 0.680243
Target:  5'- nCUCGCGacuGGCgGgAGcCGCCGCCGCc -3'
miRNA:   3'- -GGGUGCguuCCG-CgUC-GCGGCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 132169 0.66 0.680243
Target:  5'- uCCCgACGCGcggcuGGCGUGG-GCgCGCCugGc -3'
miRNA:   3'- -GGG-UGCGUu----CCGCGUCgCG-GCGGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.