miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5827 3' -61.7 NC_001806.1 + 152025 0.74 0.265327
Target:  5'- cCCCACGCccgccGCGCGcGCGCaCGCCGCc -3'
miRNA:   3'- -GGGUGCGuuc--CGCGU-CGCG-GCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 151547 0.69 0.478464
Target:  5'- gCCCGgGCGgccGGGgGCGGCGgggGCCGCGa -3'
miRNA:   3'- -GGGUgCGU---UCCgCGUCGCgg-CGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 151436 0.75 0.231032
Target:  5'- gCCCACcgGCGGGGgGCGGCggcgggGCgGCCGCGg -3'
miRNA:   3'- -GGGUG--CGUUCCgCGUCG------CGgCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 151266 0.69 0.506012
Target:  5'- gCCCACGCcGGGCGguGgggGCCgggGCCGgGg -3'
miRNA:   3'- -GGGUGCGuUCCGCguCg--CGG---CGGUgC- -5'
5827 3' -61.7 NC_001806.1 + 151143 0.78 0.146331
Target:  5'- gCCCGCGCGucgcAGGCGCAG-GCgCGCCAgGu -3'
miRNA:   3'- -GGGUGCGU----UCCGCGUCgCG-GCGGUgC- -5'
5827 3' -61.7 NC_001806.1 + 151042 0.69 0.515346
Target:  5'- aCCCggACGUggGGCGagaAGCGCaC-CCGCGc -3'
miRNA:   3'- -GGG--UGCGuuCCGCg--UCGCG-GcGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 148153 0.77 0.169468
Target:  5'- gUCACGgGGGGCGCGGCGgCGCCucuGCGu -3'
miRNA:   3'- gGGUGCgUUCCGCGUCGCgGCGG---UGC- -5'
5827 3' -61.7 NC_001806.1 + 148012 0.66 0.680243
Target:  5'- nCUCGCGacuGGCgGgAGcCGCCGCCGCc -3'
miRNA:   3'- -GGGUGCguuCCG-CgUC-GCGGCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 147975 0.7 0.450796
Target:  5'- cCCCcCGgAGGGgccagacgcccccCGCGGCGCCGCgGCu -3'
miRNA:   3'- -GGGuGCgUUCC-------------GCGUCGCGGCGgUGc -5'
5827 3' -61.7 NC_001806.1 + 147788 0.67 0.631293
Target:  5'- gCCCgggGCGgGGGGCGgAGCcuggcaugGgCGCCGCGg -3'
miRNA:   3'- -GGG---UGCgUUCCGCgUCG--------CgGCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 147742 0.73 0.296964
Target:  5'- gCCGCGCGGGgGCGCGcgggucccGaCGCgGCCGCGg -3'
miRNA:   3'- gGGUGCGUUC-CGCGU--------C-GCGgCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 147497 0.69 0.487567
Target:  5'- gCgGCGCcggAGGGgGCGGCGCCGCgGg- -3'
miRNA:   3'- gGgUGCG---UUCCgCGUCGCGGCGgUgc -5'
5827 3' -61.7 NC_001806.1 + 147432 0.66 0.650922
Target:  5'- aCCCGCGCcucuuccucGGaCGCAcCGCCGCCu-- -3'
miRNA:   3'- -GGGUGCGuu-------CC-GCGUcGCGGCGGugc -5'
5827 3' -61.7 NC_001806.1 + 147336 0.67 0.592097
Target:  5'- gCCCugaguCGgaGGGGgGguGCGUCGCCGCc -3'
miRNA:   3'- -GGGu----GCg-UUCCgCguCGCGGCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 146978 0.69 0.506012
Target:  5'- uUCACGUAAGGCGaCAGgGC-GaCCACGc -3'
miRNA:   3'- gGGUGCGUUCCGC-GUCgCGgC-GGUGC- -5'
5827 3' -61.7 NC_001806.1 + 146818 0.7 0.433419
Target:  5'- aCCCGCggucucggggaGCAGGGUGCGGCggcuccaGCCGgggaCCGCGg -3'
miRNA:   3'- -GGGUG-----------CGUUCCGCGUCG-------CGGC----GGUGC- -5'
5827 3' -61.7 NC_001806.1 + 145730 0.67 0.621476
Target:  5'- gCCGCGCGGGuGCGC-GUGCCuuuGCaCACc -3'
miRNA:   3'- gGGUGCGUUC-CGCGuCGCGG---CG-GUGc -5'
5827 3' -61.7 NC_001806.1 + 144350 0.68 0.524749
Target:  5'- cCCCGCGCcgguccauuaAGGGCGC-GCGUgcCCGCGa -3'
miRNA:   3'- -GGGUGCG----------UUCCGCGuCGCGgcGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 143640 0.66 0.670496
Target:  5'- gCCC-CGUccGGCGCGcCGCCccccGCCGCu -3'
miRNA:   3'- -GGGuGCGuuCCGCGUcGCGG----CGGUGc -5'
5827 3' -61.7 NC_001806.1 + 143107 0.72 0.316619
Target:  5'- aCCCgACGCugGGGGCGUGGCuGCCgggagggGCCGCGg -3'
miRNA:   3'- -GGG-UGCG--UUCCGCGUCG-CGG-------CGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.