miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5828 5' -59.4 NC_001806.1 + 9325 0.66 0.773996
Target:  5'- --gGCGACCgaCGUGGGGCCuCGGGa -3'
miRNA:   3'- acaUGUUGGagGCGCCCCGGcGUCUg -5'
5828 5' -59.4 NC_001806.1 + 109935 0.66 0.773996
Target:  5'- --gGCAAUCUCC-CcGGGCUGCgAGGCa -3'
miRNA:   3'- acaUGUUGGAGGcGcCCCGGCG-UCUG- -5'
5828 5' -59.4 NC_001806.1 + 60811 0.66 0.768464
Target:  5'- aGUACGucauaucgcuuaucgGCC-CCaaggaGCgGGGGCCGUGGACu -3'
miRNA:   3'- aCAUGU---------------UGGaGG-----CG-CCCCGGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 69481 0.66 0.764753
Target:  5'- gGUGCAuuGCCcUCGCGGGGUCGa--ACg -3'
miRNA:   3'- aCAUGU--UGGaGGCGCCCCGGCgucUG- -5'
5828 5' -59.4 NC_001806.1 + 135058 0.66 0.764753
Target:  5'- cUGgacCGGCC-CCGCGGGGaCGCgccGGGCc -3'
miRNA:   3'- -ACau-GUUGGaGGCGCCCCgGCG---UCUG- -5'
5828 5' -59.4 NC_001806.1 + 23261 0.66 0.764753
Target:  5'- --cGCcGCCUCCGCcGcGCCGCGGGa -3'
miRNA:   3'- acaUGuUGGAGGCGcCcCGGCGUCUg -5'
5828 5' -59.4 NC_001806.1 + 24837 0.66 0.764753
Target:  5'- ----gGGCCUCgGCcacGGGCCGCAGcgGCa -3'
miRNA:   3'- acaugUUGGAGgCGc--CCCGGCGUC--UG- -5'
5828 5' -59.4 NC_001806.1 + 110207 0.66 0.755397
Target:  5'- cGUGCGuGCCgcaCGCggugGGGGCCGaacCGGACa -3'
miRNA:   3'- aCAUGU-UGGag-GCG----CCCCGGC---GUCUG- -5'
5828 5' -59.4 NC_001806.1 + 121417 0.66 0.755397
Target:  5'- cGUGCugcGCCUugggcCCG-GGGGCCuGguGGCa -3'
miRNA:   3'- aCAUGu--UGGA-----GGCgCCCCGG-CguCUG- -5'
5828 5' -59.4 NC_001806.1 + 1319 0.66 0.755397
Target:  5'- aGUccACAACUucccgCCGCGGGGgCGUGGcCa -3'
miRNA:   3'- aCA--UGUUGGa----GGCGCCCCgGCGUCuG- -5'
5828 5' -59.4 NC_001806.1 + 126877 0.66 0.754455
Target:  5'- --gACGGCg-CCGgggcucuCGGGGCCGCAGGa -3'
miRNA:   3'- acaUGUUGgaGGC-------GCCCCGGCGUCUg -5'
5828 5' -59.4 NC_001806.1 + 33068 0.66 0.749732
Target:  5'- cGgaaaAGCCUCCGgGGGGCCuuuuucgcgucgcguGCcGGCg -3'
miRNA:   3'- aCaug-UUGGAGGCgCCCCGG---------------CGuCUG- -5'
5828 5' -59.4 NC_001806.1 + 115338 0.66 0.745935
Target:  5'- --cACGGCCaacCCGUGGGcGUCGCAG-Cg -3'
miRNA:   3'- acaUGUUGGa--GGCGCCC-CGGCGUCuG- -5'
5828 5' -59.4 NC_001806.1 + 97762 0.66 0.745935
Target:  5'- cGUGCGggaacACCUCCGCGagcaGaGCCGCAaGCc -3'
miRNA:   3'- aCAUGU-----UGGAGGCGCc---C-CGGCGUcUG- -5'
5828 5' -59.4 NC_001806.1 + 86661 0.66 0.736378
Target:  5'- cGU-CAGCCcggcggCCGUGaGGCCGCGGcACa -3'
miRNA:   3'- aCAuGUUGGa-----GGCGCcCCGGCGUC-UG- -5'
5828 5' -59.4 NC_001806.1 + 30780 0.66 0.736378
Target:  5'- --cGCuuccGCCUCCucggGCGGGGCCGuCGGuGCc -3'
miRNA:   3'- acaUGu---UGGAGG----CGCCCCGGC-GUC-UG- -5'
5828 5' -59.4 NC_001806.1 + 123738 0.66 0.736378
Target:  5'- cGUACAcuccaACC-CCaCGGGGCCucCGGGCg -3'
miRNA:   3'- aCAUGU-----UGGaGGcGCCCCGGc-GUCUG- -5'
5828 5' -59.4 NC_001806.1 + 4166 0.66 0.736378
Target:  5'- cGUACAGCaC-CCGCcccGGGGgCGgGGGCc -3'
miRNA:   3'- aCAUGUUG-GaGGCG---CCCCgGCgUCUG- -5'
5828 5' -59.4 NC_001806.1 + 114637 0.66 0.736378
Target:  5'- cGUGCAGCacgUCCGCGagagcgcGGCCGgGGAg -3'
miRNA:   3'- aCAUGUUGg--AGGCGCc------CCGGCgUCUg -5'
5828 5' -59.4 NC_001806.1 + 147226 0.66 0.736378
Target:  5'- --gGCGGCCcCCGCgGGGGUCGgGGcCg -3'
miRNA:   3'- acaUGUUGGaGGCG-CCCCGGCgUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.