miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5835 5' -55.7 NC_001806.1 + 38157 0.66 0.913364
Target:  5'- gCCGGGCcccgaGGCGCgAccacacacuguGGGGCGcuGGUUGa -3'
miRNA:   3'- -GGCCUGua---UCGCGgU-----------CCCCGU--UCAAC- -5'
5835 5' -55.7 NC_001806.1 + 131483 0.66 0.901072
Target:  5'- gCCGGAac--GCaCCgAGGGGcCAAGUUGg -3'
miRNA:   3'- -GGCCUguauCGcGG-UCCCC-GUUCAAC- -5'
5835 5' -55.7 NC_001806.1 + 5661 0.66 0.894574
Target:  5'- aUGGGCGgGGCGCgA-GGGCGGGUg- -3'
miRNA:   3'- gGCCUGUaUCGCGgUcCCCGUUCAac -5'
5835 5' -55.7 NC_001806.1 + 28313 0.66 0.901072
Target:  5'- gCCGGGCGccauguuggGGCGCCauguuaGGGGGCGu---- -3'
miRNA:   3'- -GGCCUGUa--------UCGCGG------UCCCCGUucaac -5'
5835 5' -55.7 NC_001806.1 + 77468 0.66 0.903606
Target:  5'- cCCGGccaagaggccgacccGCAgaugcuGCGCCGccGGGGCGAGg-- -3'
miRNA:   3'- -GGCC---------------UGUau----CGCGGU--CCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 127749 0.66 0.907336
Target:  5'- cCCGGGCG-GGCuGCCGGGuGCGGGccugUGg -3'
miRNA:   3'- -GGCCUGUaUCG-CGGUCCcCGUUCa---AC- -5'
5835 5' -55.7 NC_001806.1 + 48068 0.66 0.894574
Target:  5'- aCGGA---GGaGCCAGGGGCGccGUUGa -3'
miRNA:   3'- gGCCUguaUCgCGGUCCCCGUu-CAAC- -5'
5835 5' -55.7 NC_001806.1 + 4434 0.66 0.894574
Target:  5'- cCCGGGCGggGGCGgcguccgcCCGGGGGCu----- -3'
miRNA:   3'- -GGCCUGUa-UCGC--------GGUCCCCGuucaac -5'
5835 5' -55.7 NC_001806.1 + 78267 0.66 0.919154
Target:  5'- gCUGG-CAgacUGGCGCC-GcGGCAAGUUGu -3'
miRNA:   3'- -GGCCuGU---AUCGCGGuCcCCGUUCAAC- -5'
5835 5' -55.7 NC_001806.1 + 2509 0.66 0.894574
Target:  5'- aCGcGGCcugGGCGgCGGGGGCGGGc-- -3'
miRNA:   3'- gGC-CUGua-UCGCgGUCCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 10495 0.66 0.901072
Target:  5'- gUCGGGgGUGGgGUCGgaacuGGGGCcGGUUGc -3'
miRNA:   3'- -GGCCUgUAUCgCGGU-----CCCCGuUCAAC- -5'
5835 5' -55.7 NC_001806.1 + 121409 0.66 0.907336
Target:  5'- gCCGGGCGcgugcuGCGCCuugggcccGGGGGCcuGGUg- -3'
miRNA:   3'- -GGCCUGUau----CGCGG--------UCCCCGu-UCAac -5'
5835 5' -55.7 NC_001806.1 + 143118 0.66 0.901072
Target:  5'- -gGGGCGUGGCuGCCgggAGGGGCcgcGGaUGg -3'
miRNA:   3'- ggCCUGUAUCG-CGG---UCCCCGu--UCaAC- -5'
5835 5' -55.7 NC_001806.1 + 50645 0.66 0.926323
Target:  5'- cCCGGGCGUgcggggacgcgcaccGGCGCCGGGacgacgcGGCGGc--- -3'
miRNA:   3'- -GGCCUGUA---------------UCGCGGUCC-------CCGUUcaac -5'
5835 5' -55.7 NC_001806.1 + 80992 0.66 0.907336
Target:  5'- aCCGGuCGUAGCGCCcuGGcGGUAc---- -3'
miRNA:   3'- -GGCCuGUAUCGCGGu-CC-CCGUucaac -5'
5835 5' -55.7 NC_001806.1 + 2583 0.66 0.901072
Target:  5'- -aGGGCcgGuCGCCAGGGGaCGGGg-- -3'
miRNA:   3'- ggCCUGuaUcGCGGUCCCC-GUUCaac -5'
5835 5' -55.7 NC_001806.1 + 120324 0.66 0.907336
Target:  5'- -gGGACGgGGCgGUCGGGGGCGgcgGGUc- -3'
miRNA:   3'- ggCCUGUaUCG-CGGUCCCCGU---UCAac -5'
5835 5' -55.7 NC_001806.1 + 129997 0.66 0.918586
Target:  5'- aCCGGACAUGGUGuCCGuguaccagucccuGGGaCGGGUg- -3'
miRNA:   3'- -GGCCUGUAUCGC-GGU-------------CCCcGUUCAac -5'
5835 5' -55.7 NC_001806.1 + 62314 0.66 0.894574
Target:  5'- gCGGGCcUGGCGCggaGGGGGUuuGUc- -3'
miRNA:   3'- gGCCUGuAUCGCGg--UCCCCGuuCAac -5'
5835 5' -55.7 NC_001806.1 + 42302 0.66 0.894574
Target:  5'- -gGGACGcAGCGCUGacggugucGGGGCGGGggGc -3'
miRNA:   3'- ggCCUGUaUCGCGGU--------CCCCGUUCaaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.