miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5835 5' -55.7 NC_001806.1 + 50645 0.66 0.926323
Target:  5'- cCCGGGCGUgcggggacgcgcaccGGCGCCGGGacgacgcGGCGGc--- -3'
miRNA:   3'- -GGCCUGUA---------------UCGCGGUCC-------CCGUUcaac -5'
5835 5' -55.7 NC_001806.1 + 46816 0.7 0.704232
Target:  5'- aCCGGGacugGGUgGCgGGGGGUggGUUGg -3'
miRNA:   3'- -GGCCUgua-UCG-CGgUCCCCGuuCAAC- -5'
5835 5' -55.7 NC_001806.1 + 11836 0.7 0.714247
Target:  5'- -aGGGgGUGGagGCCugguuAGGGGCGGGUUGg -3'
miRNA:   3'- ggCCUgUAUCg-CGG-----UCCCCGUUCAAC- -5'
5835 5' -55.7 NC_001806.1 + 26699 0.7 0.714247
Target:  5'- cCCGG-CGUGG-GCCcgGGGGGCGGGg-- -3'
miRNA:   3'- -GGCCuGUAUCgCGG--UCCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 34037 0.7 0.724191
Target:  5'- aCCGGGCucagugGGgGCguGGGGUggGUg- -3'
miRNA:   3'- -GGCCUGua----UCgCGguCCCCGuuCAac -5'
5835 5' -55.7 NC_001806.1 + 34420 0.7 0.734056
Target:  5'- gCCGGGCcgGGCcggGCCGGguGGGCGGGg-- -3'
miRNA:   3'- -GGCCUGuaUCG---CGGUC--CCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 22053 0.7 0.742858
Target:  5'- gCCGuGGCccGGCGCCGggcccccgcccccGGGGCGGGUg- -3'
miRNA:   3'- -GGC-CUGuaUCGCGGU-------------CCCCGUUCAac -5'
5835 5' -55.7 NC_001806.1 + 61339 0.7 0.753509
Target:  5'- gCGGAaagcUGGCGUCGGGGGguGGg-- -3'
miRNA:   3'- gGCCUgu--AUCGCGGUCCCCguUCaac -5'
5835 5' -55.7 NC_001806.1 + 83788 0.7 0.753509
Target:  5'- aUCGGAaccuUGGCcuCCGGGGGCGAGg-- -3'
miRNA:   3'- -GGCCUgu--AUCGc-GGUCCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 27005 0.71 0.694156
Target:  5'- aCCGGGCucgguuccGGCGCCGGGuGGCGgAGg-- -3'
miRNA:   3'- -GGCCUGua------UCGCGGUCC-CCGU-UCaac -5'
5835 5' -55.7 NC_001806.1 + 135086 0.71 0.684028
Target:  5'- gCCGGAaaucGGCGCCgaccggggagGGGGGCGGGg-- -3'
miRNA:   3'- -GGCCUgua-UCGCGG----------UCCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 14130 0.71 0.673857
Target:  5'- gCCGGACAUGGUuUgGGGGGCGcaccGGUg- -3'
miRNA:   3'- -GGCCUGUAUCGcGgUCCCCGU----UCAac -5'
5835 5' -55.7 NC_001806.1 + 24656 0.74 0.482948
Target:  5'- cCCGuGuACGUGGCGCUGGGGcGCGAGgcGg -3'
miRNA:   3'- -GGC-C-UGUAUCGCGGUCCC-CGUUCaaC- -5'
5835 5' -55.7 NC_001806.1 + 1437 0.74 0.502143
Target:  5'- cCCGGGC--GGCGCCGGcGGCAGGg-- -3'
miRNA:   3'- -GGCCUGuaUCGCGGUCcCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 32992 0.72 0.591962
Target:  5'- cCCGGGCcgGGcCGCCacGGGGGCcggccGUUGg -3'
miRNA:   3'- -GGCCUGuaUC-GCGG--UCCCCGuu---CAAC- -5'
5835 5' -55.7 NC_001806.1 + 147775 0.72 0.591962
Target:  5'- gCGGACGcggGGgGCCcGGGGCGGGggGc -3'
miRNA:   3'- gGCCUGUa--UCgCGGuCCCCGUUCaaC- -5'
5835 5' -55.7 NC_001806.1 + 122322 0.72 0.602175
Target:  5'- aCCaGGucuugcCGUGGCGCCGGGGGaCGAGa-- -3'
miRNA:   3'- -GG-CCu-----GUAUCGCGGUCCCC-GUUCaac -5'
5835 5' -55.7 NC_001806.1 + 151272 0.71 0.643174
Target:  5'- gCCGGGCGgugGGgGCC-GGGGCcGGggGg -3'
miRNA:   3'- -GGCCUGUa--UCgCGGuCCCCGuUCaaC- -5'
5835 5' -55.7 NC_001806.1 + 52595 0.71 0.653421
Target:  5'- -gGGGCAUcGCGCgGGGGGUggGa-- -3'
miRNA:   3'- ggCCUGUAuCGCGgUCCCCGuuCaac -5'
5835 5' -55.7 NC_001806.1 + 6083 0.71 0.653421
Target:  5'- gCGGGCccgGGCgGCgGGGGGCGGGUc- -3'
miRNA:   3'- gGCCUGua-UCG-CGgUCCCCGUUCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.