Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5835 | 5' | -55.7 | NC_001806.1 | + | 151313 | 0.76 | 0.418793 |
Target: 5'- gCCGGGCcucUGGCGCCGGcucGGGCGGGggGc -3' miRNA: 3'- -GGCCUGu--AUCGCGGUC---CCCGUUCaaC- -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 24656 | 0.74 | 0.482948 |
Target: 5'- cCCGuGuACGUGGCGCUGGGGcGCGAGgcGg -3' miRNA: 3'- -GGC-C-UGUAUCGCGGUCCC-CGUUCaaC- -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 1437 | 0.74 | 0.502143 |
Target: 5'- cCCGGGC--GGCGCCGGcGGCAGGg-- -3' miRNA: 3'- -GGCCUGuaUCGCGGUCcCCGUUCaac -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 32992 | 0.72 | 0.591962 |
Target: 5'- cCCGGGCcgGGcCGCCacGGGGGCcggccGUUGg -3' miRNA: 3'- -GGCCUGuaUC-GCGG--UCCCCGuu---CAAC- -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 147775 | 0.72 | 0.591962 |
Target: 5'- gCGGACGcggGGgGCCcGGGGCGGGggGc -3' miRNA: 3'- gGCCUGUa--UCgCGGuCCCCGUUCaaC- -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 122322 | 0.72 | 0.602175 |
Target: 5'- aCCaGGucuugcCGUGGCGCCGGGGGaCGAGa-- -3' miRNA: 3'- -GG-CCu-----GUAUCGCGGUCCCC-GUUCaac -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 151272 | 0.71 | 0.643174 |
Target: 5'- gCCGGGCGgugGGgGCC-GGGGCcGGggGg -3' miRNA: 3'- -GGCCUGUa--UCgCGGuCCCCGuUCaaC- -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 52595 | 0.71 | 0.653421 |
Target: 5'- -gGGGCAUcGCGCgGGGGGUggGa-- -3' miRNA: 3'- ggCCUGUAuCGCGgUCCCCGuuCaac -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 6083 | 0.71 | 0.653421 |
Target: 5'- gCGGGCccgGGCgGCgGGGGGCGGGUc- -3' miRNA: 3'- gGCCUGua-UCG-CGgUCCCCGUUCAac -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 14130 | 0.71 | 0.673857 |
Target: 5'- gCCGGACAUGGUuUgGGGGGCGcaccGGUg- -3' miRNA: 3'- -GGCCUGUAUCGcGgUCCCCGU----UCAac -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 135086 | 0.71 | 0.684028 |
Target: 5'- gCCGGAaaucGGCGCCgaccggggagGGGGGCGGGg-- -3' miRNA: 3'- -GGCCUgua-UCGCGG----------UCCCCGUUCaac -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 27005 | 0.71 | 0.694156 |
Target: 5'- aCCGGGCucgguuccGGCGCCGGGuGGCGgAGg-- -3' miRNA: 3'- -GGCCUGua------UCGCGGUCC-CCGU-UCaac -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 46816 | 0.7 | 0.704232 |
Target: 5'- aCCGGGacugGGUgGCgGGGGGUggGUUGg -3' miRNA: 3'- -GGCCUgua-UCG-CGgUCCCCGuuCAAC- -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 11836 | 0.7 | 0.714247 |
Target: 5'- -aGGGgGUGGagGCCugguuAGGGGCGGGUUGg -3' miRNA: 3'- ggCCUgUAUCg-CGG-----UCCCCGUUCAAC- -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 26699 | 0.7 | 0.714247 |
Target: 5'- cCCGG-CGUGG-GCCcgGGGGGCGGGg-- -3' miRNA: 3'- -GGCCuGUAUCgCGG--UCCCCGUUCaac -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 34037 | 0.7 | 0.724191 |
Target: 5'- aCCGGGCucagugGGgGCguGGGGUggGUg- -3' miRNA: 3'- -GGCCUGua----UCgCGguCCCCGuuCAac -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 34420 | 0.7 | 0.734056 |
Target: 5'- gCCGGGCcgGGCcggGCCGGguGGGCGGGg-- -3' miRNA: 3'- -GGCCUGuaUCG---CGGUC--CCCGUUCaac -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 22053 | 0.7 | 0.742858 |
Target: 5'- gCCGuGGCccGGCGCCGggcccccgcccccGGGGCGGGUg- -3' miRNA: 3'- -GGC-CUGuaUCGCGGU-------------CCCCGUUCAac -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 83788 | 0.7 | 0.753509 |
Target: 5'- aUCGGAaccuUGGCcuCCGGGGGCGAGg-- -3' miRNA: 3'- -GGCCUgu--AUCGc-GGUCCCCGUUCaac -5' |
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5835 | 5' | -55.7 | NC_001806.1 | + | 151543 | 0.7 | 0.753509 |
Target: 5'- gUGGGCccgGGCgGCCGGGGGCGGcGggGg -3' miRNA: 3'- gGCCUGua-UCG-CGGUCCCCGUU-CaaC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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