miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5835 5' -55.7 NC_001806.1 + 1437 0.74 0.502143
Target:  5'- cCCGGGC--GGCGCCGGcGGCAGGg-- -3'
miRNA:   3'- -GGCCUGuaUCGCGGUCcCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 2509 0.66 0.894574
Target:  5'- aCGcGGCcugGGCGgCGGGGGCGGGc-- -3'
miRNA:   3'- gGC-CUGua-UCGCgGUCCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 2583 0.66 0.901072
Target:  5'- -aGGGCcgGuCGCCAGGGGaCGGGg-- -3'
miRNA:   3'- ggCCUGuaUcGCGGUCCCC-GUUCaac -5'
5835 5' -55.7 NC_001806.1 + 2820 0.69 0.76308
Target:  5'- gCGGGCucgGGCcCCGGGGGCGuggAGggGg -3'
miRNA:   3'- gGCCUGua-UCGcGGUCCCCGU---UCaaC- -5'
5835 5' -55.7 NC_001806.1 + 2873 0.67 0.873714
Target:  5'- gCGGGCGUccgaGCCGGGGGCGu---- -3'
miRNA:   3'- gGCCUGUAucg-CGGUCCCCGUucaac -5'
5835 5' -55.7 NC_001806.1 + 4434 0.66 0.894574
Target:  5'- cCCGGGCGggGGCGgcguccgcCCGGGGGCu----- -3'
miRNA:   3'- -GGCCUGUa-UCGC--------GGUCCCCGuucaac -5'
5835 5' -55.7 NC_001806.1 + 5468 0.66 0.924704
Target:  5'- cUCGGGCucauAUAGUcCCAGGGGCcGGcgGg -3'
miRNA:   3'- -GGCCUG----UAUCGcGGUCCCCGuUCaaC- -5'
5835 5' -55.7 NC_001806.1 + 5661 0.66 0.894574
Target:  5'- aUGGGCGgGGCGCgA-GGGCGGGUg- -3'
miRNA:   3'- gGCCUGUaUCGCGgUcCCCGUUCAac -5'
5835 5' -55.7 NC_001806.1 + 5939 0.66 0.901072
Target:  5'- gCGGGCGggacCGCCccaaGGGGGCGGGg-- -3'
miRNA:   3'- gGCCUGUauc-GCGG----UCCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 6083 0.71 0.653421
Target:  5'- gCGGGCccgGGCgGCgGGGGGCGGGUc- -3'
miRNA:   3'- gGCCUGua-UCG-CGgUCCCCGUUCAac -5'
5835 5' -55.7 NC_001806.1 + 10495 0.66 0.901072
Target:  5'- gUCGGGgGUGGgGUCGgaacuGGGGCcGGUUGc -3'
miRNA:   3'- -GGCCUgUAUCgCGGU-----CCCCGuUCAAC- -5'
5835 5' -55.7 NC_001806.1 + 11836 0.7 0.714247
Target:  5'- -aGGGgGUGGagGCCugguuAGGGGCGGGUUGg -3'
miRNA:   3'- ggCCUgUAUCg-CGG-----UCCCCGUUCAAC- -5'
5835 5' -55.7 NC_001806.1 + 12979 0.68 0.834688
Target:  5'- cUCGGAC--AGCuCCGGGGGCAgcagGGUg- -3'
miRNA:   3'- -GGCCUGuaUCGcGGUCCCCGU----UCAac -5'
5835 5' -55.7 NC_001806.1 + 14130 0.71 0.673857
Target:  5'- gCCGGACAUGGUuUgGGGGGCGcaccGGUg- -3'
miRNA:   3'- -GGCCUGUAUCGcGgUCCCCGU----UCAac -5'
5835 5' -55.7 NC_001806.1 + 15070 0.66 0.924704
Target:  5'- uUCGGGCGacuggucucggGGCGCgCGGGGGaguuGUUGg -3'
miRNA:   3'- -GGCCUGUa----------UCGCG-GUCCCCguu-CAAC- -5'
5835 5' -55.7 NC_001806.1 + 20535 0.68 0.817734
Target:  5'- gCCGGAUcgGGCgguaaugagauGCCAugcGGGGCGGGg-- -3'
miRNA:   3'- -GGCCUGuaUCG-----------CGGU---CCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 20665 0.68 0.834688
Target:  5'- cCCGG-CGUgccGGCGUC-GGGGCGGGg-- -3'
miRNA:   3'- -GGCCuGUA---UCGCGGuCCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 22053 0.7 0.742858
Target:  5'- gCCGuGGCccGGCGCCGggcccccgcccccGGGGCGGGUg- -3'
miRNA:   3'- -GGC-CUGuaUCGCGGU-------------CCCCGUUCAac -5'
5835 5' -55.7 NC_001806.1 + 24031 0.68 0.808998
Target:  5'- gCCGGACAcGGcCGCCu-GGGCGGGcaaUUGg -3'
miRNA:   3'- -GGCCUGUaUC-GCGGucCCCGUUC---AAC- -5'
5835 5' -55.7 NC_001806.1 + 24656 0.74 0.482948
Target:  5'- cCCGuGuACGUGGCGCUGGGGcGCGAGgcGg -3'
miRNA:   3'- -GGC-C-UGUAUCGCGGUCCC-CGUUCaaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.