miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5841 5' -58 NC_001806.1 + 117030 0.66 0.892658
Target:  5'- cCCguuaUACGcuaUCCCUaaGGCCCGGCuaGACCc -3'
miRNA:   3'- -GGac--AUGC---AGGGAg-CCGGGCUG--CUGG- -5'
5841 5' -58 NC_001806.1 + 90395 0.66 0.892658
Target:  5'- uCCgUGUACGUCUUUCa---CGGCGGCCg -3'
miRNA:   3'- -GG-ACAUGCAGGGAGccggGCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 1430 0.66 0.886137
Target:  5'- ----aGCGaaUCCCgggCGGCgCCGGCGGCa -3'
miRNA:   3'- ggacaUGC--AGGGa--GCCG-GGCUGCUGg -5'
5841 5' -58 NC_001806.1 + 27073 0.66 0.886137
Target:  5'- gCCcGUGCccgggCCCUggcccgcggagcCGGCCCGGCGAa- -3'
miRNA:   3'- -GGaCAUGca---GGGA------------GCCGGGCUGCUgg -5'
5841 5' -58 NC_001806.1 + 68378 0.66 0.885474
Target:  5'- aCCUGUGCG-CgCUCcaccgGGCCCacgggcuuccggaGACGGCg -3'
miRNA:   3'- -GGACAUGCaGgGAG-----CCGGG-------------CUGCUGg -5'
5841 5' -58 NC_001806.1 + 64862 0.66 0.879408
Target:  5'- cCCUccGcGCGUCCCg-GGCCaCGGCGggaucgGCCg -3'
miRNA:   3'- -GGA--CaUGCAGGGagCCGG-GCUGC------UGG- -5'
5841 5' -58 NC_001806.1 + 4462 0.66 0.879408
Target:  5'- gCUGccgGCGccgCgCUCGacggaccccGCCCGACGGCCc -3'
miRNA:   3'- gGACa--UGCa--GgGAGC---------CGGGCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 26781 0.66 0.879408
Target:  5'- gCCUGcGCGUCaCCgCGGagcaCCUGGCGcGCCu -3'
miRNA:   3'- -GGACaUGCAG-GGaGCC----GGGCUGC-UGG- -5'
5841 5' -58 NC_001806.1 + 53039 0.66 0.879408
Target:  5'- ----cACGcCgCCUCGGCCCGcgaACGGCa -3'
miRNA:   3'- ggacaUGCaG-GGAGCCGGGC---UGCUGg -5'
5841 5' -58 NC_001806.1 + 116658 0.66 0.878724
Target:  5'- gCUGgcggACGUCCaacaaCUCGGuCCCGuaaacgccgagcuGCGAUCg -3'
miRNA:   3'- gGACa---UGCAGG-----GAGCC-GGGC-------------UGCUGG- -5'
5841 5' -58 NC_001806.1 + 124947 0.66 0.872476
Target:  5'- cCCUGUuuGUCaaCUCGGC-CGA-GACCa -3'
miRNA:   3'- -GGACAugCAGg-GAGCCGgGCUgCUGG- -5'
5841 5' -58 NC_001806.1 + 123898 0.66 0.872476
Target:  5'- gCCgc-GCGUCCCcCGagacGCCCGguacgGCGGCCa -3'
miRNA:   3'- -GGacaUGCAGGGaGC----CGGGC-----UGCUGG- -5'
5841 5' -58 NC_001806.1 + 102342 0.66 0.86822
Target:  5'- cCCgGgggACGUCCCcCGGggccgccgggagcacCCCGugGugCa -3'
miRNA:   3'- -GGaCa--UGCAGGGaGCC---------------GGGCugCugG- -5'
5841 5' -58 NC_001806.1 + 13008 0.66 0.865343
Target:  5'- uCgUGUAUGgggCCUUgGGCCCGugccacccgGCGAUCu -3'
miRNA:   3'- -GgACAUGCa--GGGAgCCGGGC---------UGCUGG- -5'
5841 5' -58 NC_001806.1 + 56506 0.66 0.865343
Target:  5'- aCCUGgggccacaGCGgcaggCCCg-GGCCCGGCGuuccCCg -3'
miRNA:   3'- -GGACa-------UGCa----GGGagCCGGGCUGCu---GG- -5'
5841 5' -58 NC_001806.1 + 112232 0.66 0.865343
Target:  5'- aCCUGgacaACGgccgCCUggccaccagggUGGCCCGgGCGACCc -3'
miRNA:   3'- -GGACa---UGCa---GGGa----------GCCGGGC-UGCUGG- -5'
5841 5' -58 NC_001806.1 + 136024 0.66 0.865343
Target:  5'- cCUUGUuaACGaCCCgcgCGGCaCCGGCcACCc -3'
miRNA:   3'- -GGACA--UGCaGGGa--GCCG-GGCUGcUGG- -5'
5841 5' -58 NC_001806.1 + 147068 0.66 0.863166
Target:  5'- uCCgcgugGcGCGUCuuccgggcacacuuCCUCGGCCCccGCGGCCc -3'
miRNA:   3'- -GGa----CaUGCAG--------------GGAGCCGGGc-UGCUGG- -5'
5841 5' -58 NC_001806.1 + 50086 0.66 0.858016
Target:  5'- ---uUGCGUCCCgUCgGGgCCG-CGGCCg -3'
miRNA:   3'- ggacAUGCAGGG-AG-CCgGGCuGCUGG- -5'
5841 5' -58 NC_001806.1 + 19048 0.66 0.858016
Target:  5'- gCUGcucCGcCUCUgGGCCUGGCGcACCg -3'
miRNA:   3'- gGACau-GCaGGGAgCCGGGCUGC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.