miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 3' -61.2 NC_001806.1 + 14682 0.66 0.735085
Target:  5'- cCCUGGCCGCcuc---CGGGGgCGAGg -3'
miRNA:   3'- cGGACCGGCGccacuaGCCCUgGCUC- -5'
5855 3' -61.2 NC_001806.1 + 33236 0.66 0.735085
Target:  5'- cGCCgUGGCgGCGcugcgccuugcGUGGggcUCGGGGgCGAGc -3'
miRNA:   3'- -CGG-ACCGgCGC-----------CACU---AGCCCUgGCUC- -5'
5855 3' -61.2 NC_001806.1 + 149553 0.66 0.735085
Target:  5'- cGCCgccaGCCGCccaGGgGGUCGGGGCCc-- -3'
miRNA:   3'- -CGGac--CGGCG---CCaCUAGCCCUGGcuc -5'
5855 3' -61.2 NC_001806.1 + 4456 0.66 0.735085
Target:  5'- aGCCUGgcaugggcGCCGCGGgGGgccugUGGGgagagGCCGGGg -3'
miRNA:   3'- -CGGAC--------CGGCGCCaCUa----GCCC-----UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 34226 0.66 0.734148
Target:  5'- gGCCaugaGGCCGCuguugguGGUGGUCGaGGGgCGGu -3'
miRNA:   3'- -CGGa---CCGGCG-------CCACUAGC-CCUgGCUc -5'
5855 3' -61.2 NC_001806.1 + 79787 0.66 0.732271
Target:  5'- cGCgUGGCCaucacgcacccccuGCGGggcgaGAUCGcGGGCCuGGGg -3'
miRNA:   3'- -CGgACCGG--------------CGCCa----CUAGC-CCUGG-CUC- -5'
5855 3' -61.2 NC_001806.1 + 95509 0.66 0.72945
Target:  5'- cGCCUGcGgugaugacacagacgCgGCGGUGGUCGGGGCa--- -3'
miRNA:   3'- -CGGAC-C---------------GgCGCCACUAGCCCUGgcuc -5'
5855 3' -61.2 NC_001806.1 + 125245 0.66 0.725679
Target:  5'- uCCgGcGCCG-GGUGG-CGGaGGCCGAGg -3'
miRNA:   3'- cGGaC-CGGCgCCACUaGCC-CUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 74976 0.66 0.716199
Target:  5'- aCCUGGCCccauggGCGGUGGaggaguucCGGGGCgcgCGGGa -3'
miRNA:   3'- cGGACCGG------CGCCACUa-------GCCCUG---GCUC- -5'
5855 3' -61.2 NC_001806.1 + 1800 0.66 0.715247
Target:  5'- uGCCcauuaagGGCCGCGGgaauugccgGAagCGGGaagggcgGCCGGGg -3'
miRNA:   3'- -CGGa------CCGGCGCCa--------CUa-GCCC-------UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 23973 0.66 0.714295
Target:  5'- aGCCgGGCCGaCGacgcgaugaugGGUCGGGGCCa-- -3'
miRNA:   3'- -CGGaCCGGC-GCca---------CUAGCCCUGGcuc -5'
5855 3' -61.2 NC_001806.1 + 56835 0.66 0.706653
Target:  5'- cGCCgcgGGCC-CGGgGGgcaGGGGcCCGAGa -3'
miRNA:   3'- -CGGa--CCGGcGCCaCUag-CCCU-GGCUC- -5'
5855 3' -61.2 NC_001806.1 + 73283 0.66 0.706653
Target:  5'- cCCcGGUCGCGGUGuugUGGGAaaacCCGGa -3'
miRNA:   3'- cGGaCCGGCGCCACua-GCCCU----GGCUc -5'
5855 3' -61.2 NC_001806.1 + 146193 0.66 0.706653
Target:  5'- cGCC-GGCCcCGG-GggCGGGcCCGGGc -3'
miRNA:   3'- -CGGaCCGGcGCCaCuaGCCCuGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 98173 0.66 0.69705
Target:  5'- cCCaGGCCGCGG----CGGGgaGCCGAGc -3'
miRNA:   3'- cGGaCCGGCGCCacuaGCCC--UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 98386 0.66 0.687397
Target:  5'- uGUUUGGCagccgCGCGGgGAUCaGGGucGCCGGGg -3'
miRNA:   3'- -CGGACCG-----GCGCCaCUAG-CCC--UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 137181 0.66 0.687397
Target:  5'- gGUCUcggGGCgCGCGGggGAguugUUGGGAUCGGGg -3'
miRNA:   3'- -CGGA---CCG-GCGCCa-CU----AGCCCUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 101493 0.66 0.677702
Target:  5'- -aCUGGCCGCGuuUGA-CGGGGgauucacggcccCCGAGg -3'
miRNA:   3'- cgGACCGGCGCc-ACUaGCCCU------------GGCUC- -5'
5855 3' -61.2 NC_001806.1 + 93917 0.67 0.671868
Target:  5'- cGCCUGGcCCGCcuuGGUGAgcgcguuggacaggaUCuGGACCuGGGu -3'
miRNA:   3'- -CGGACC-GGCG---CCACU---------------AGcCCUGG-CUC- -5'
5855 3' -61.2 NC_001806.1 + 85730 0.67 0.671868
Target:  5'- gGCCaGGcCCGCGaGgggGAagucgggguuucgguUUGGGGCCGGGg -3'
miRNA:   3'- -CGGaCC-GGCGC-Ca--CU---------------AGCCCUGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.