miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 38264 0.66 0.936541
Target:  5'- cGCCGCGGaugaccgGCCGC-ACCG-GGgGGCGg -3'
miRNA:   3'- -CGGUGUCa------UGGCGaUGGCgCUgCUGU- -5'
5855 5' -55.5 NC_001806.1 + 124989 0.66 0.936541
Target:  5'- gGCCAauCGGcgGCCGCcAgCGCGGCGGg- -3'
miRNA:   3'- -CGGU--GUCa-UGGCGaUgGCGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 129332 0.66 0.936541
Target:  5'- cCCGCGGgccCCGCUuccccGCCGCGcCGcACGc -3'
miRNA:   3'- cGGUGUCau-GGCGA-----UGGCGCuGC-UGU- -5'
5855 5' -55.5 NC_001806.1 + 148058 0.66 0.936541
Target:  5'- gGCCACGGcuccCCGCUGacguacCCGUcGCGAUAg -3'
miRNA:   3'- -CGGUGUCau--GGCGAU------GGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 150262 0.66 0.936541
Target:  5'- cGCCA-GGUagGCgUGCUGCCGCGACa--- -3'
miRNA:   3'- -CGGUgUCA--UG-GCGAUGGCGCUGcugu -5'
5855 5' -55.5 NC_001806.1 + 89093 0.66 0.936541
Target:  5'- aCCGCAGguugUCGUUGCCGCGGguGCAc -3'
miRNA:   3'- cGGUGUCau--GGCGAUGGCGCUgcUGU- -5'
5855 5' -55.5 NC_001806.1 + 127627 0.66 0.931571
Target:  5'- gGCCugGGcgcGCCGCUGcggcCCGUGuACGugGc -3'
miRNA:   3'- -CGGugUCa--UGGCGAU----GGCGC-UGCugU- -5'
5855 5' -55.5 NC_001806.1 + 92236 0.66 0.931571
Target:  5'- aGCCGCGcUGCCGUccGCCGCGcccuCGAa- -3'
miRNA:   3'- -CGGUGUcAUGGCGa-UGGCGCu---GCUgu -5'
5855 5' -55.5 NC_001806.1 + 24236 0.66 0.931571
Target:  5'- uGCuCGCAGgccagGCCGacgaUGcCCGUGGCGGCc -3'
miRNA:   3'- -CG-GUGUCa----UGGCg---AU-GGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 148385 0.66 0.928475
Target:  5'- cGCCACgcugccggugaugaaGGaGCUGCUGuuGCGcGCGGCGc -3'
miRNA:   3'- -CGGUG---------------UCaUGGCGAUggCGC-UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 99396 0.66 0.926364
Target:  5'- cCCgACAGgcgACCGC--CgGCGGCGACGu -3'
miRNA:   3'- cGG-UGUCa--UGGCGauGgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 82390 0.66 0.926364
Target:  5'- aGCCACGcccccucuGUccACCug-GCCGCGGCGACc -3'
miRNA:   3'- -CGGUGU--------CA--UGGcgaUGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 66520 0.66 0.926364
Target:  5'- cCUGCGGU-CCGgaGCCGCG-CGGCc -3'
miRNA:   3'- cGGUGUCAuGGCgaUGGCGCuGCUGu -5'
5855 5' -55.5 NC_001806.1 + 129594 0.66 0.926364
Target:  5'- cGCCGCGGggauccucGCCGCc-CUGgGGCGGCu -3'
miRNA:   3'- -CGGUGUCa-------UGGCGauGGCgCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 64609 0.66 0.926364
Target:  5'- cCCGC-GUugCGCggGCC-CGGCGGCGu -3'
miRNA:   3'- cGGUGuCAugGCGa-UGGcGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 70317 0.66 0.920919
Target:  5'- cGCCuccCGGgACCGCcggguuCgGCGGCGACGg -3'
miRNA:   3'- -CGGu--GUCaUGGCGau----GgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 33071 0.66 0.920919
Target:  5'- cGCCGCcGccCCGCcgGCCGCGAaggaGGCu -3'
miRNA:   3'- -CGGUGuCauGGCGa-UGGCGCUg---CUGu -5'
5855 5' -55.5 NC_001806.1 + 97896 0.66 0.920919
Target:  5'- cGCCGauga--CGCUGCCGCGACuGugAu -3'
miRNA:   3'- -CGGUgucaugGCGAUGGCGCUG-CugU- -5'
5855 5' -55.5 NC_001806.1 + 77779 0.66 0.920919
Target:  5'- cGCCGCAGcucgggucugGCCgaGCUGCgGCGcuuCGACGc -3'
miRNA:   3'- -CGGUGUCa---------UGG--CGAUGgCGCu--GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 38183 0.66 0.915237
Target:  5'- cUCGCGGgGCCGCUGCUGCaccGCGGgGg -3'
miRNA:   3'- cGGUGUCaUGGCGAUGGCGc--UGCUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.