miRNA display CGI


Results 1 - 20 of 271 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5859 3' -65.5 NC_001806.1 + 7397 0.65 0.529514
Target:  5'- cGCCGGCaCGCGacgcgaaaaagGCCCCccggaggcuuuuccGGGUUcccgGCCCg -3'
miRNA:   3'- aCGGCUG-GCGCg----------CGGGG--------------UCCAG----CGGG- -5'
5859 3' -65.5 NC_001806.1 + 123756 0.66 0.523077
Target:  5'- gGCCccuuuGACucagaCGCaGgGCCCgGGGUCGCCg -3'
miRNA:   3'- aCGG-----CUG-----GCG-CgCGGGgUCCAGCGGg -5'
5859 3' -65.5 NC_001806.1 + 59805 0.66 0.523077
Target:  5'- gGCgCGAgCGCcaacGCGUCCgAGGcCGCCa -3'
miRNA:   3'- aCG-GCUgGCG----CGCGGGgUCCaGCGGg -5'
5859 3' -65.5 NC_001806.1 + 20278 0.66 0.523077
Target:  5'- cGCCaGACCGgGCcggugGCCCU-GuUCGCCCc -3'
miRNA:   3'- aCGG-CUGGCgCG-----CGGGGuCcAGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 125594 0.66 0.523077
Target:  5'- cGCCG-CCGCcccccgGCCCCGGcccccacCGCCCg -3'
miRNA:   3'- aCGGCuGGCGcg----CGGGGUCca-----GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 110028 0.66 0.523077
Target:  5'- gGCCG-CCGCG-GCCCCGcGGgCGUa- -3'
miRNA:   3'- aCGGCuGGCGCgCGGGGU-CCaGCGgg -5'
5859 3' -65.5 NC_001806.1 + 129001 0.66 0.523077
Target:  5'- cGCCGccuCCGcCGCGCCgCGGGaggggCGCa- -3'
miRNA:   3'- aCGGCu--GGC-GCGCGGgGUCCa----GCGgg -5'
5859 3' -65.5 NC_001806.1 + 121996 0.66 0.513934
Target:  5'- gGcCCGGCCccCGCGCCCC-GGcC-CCCg -3'
miRNA:   3'- aC-GGCUGGc-GCGCGGGGuCCaGcGGG- -5'
5859 3' -65.5 NC_001806.1 + 97600 0.66 0.513934
Target:  5'- gGCCGACUuaGcCGCCggugagGGGUCGUCCc -3'
miRNA:   3'- aCGGCUGGcgC-GCGGgg----UCCAGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 32658 0.66 0.513934
Target:  5'- aGCCccccggcgggGGCCGCuuuguggccccaGCGCCCCAcGG--GCCCg -3'
miRNA:   3'- aCGG----------CUGGCG------------CGCGGGGU-CCagCGGG- -5'
5859 3' -65.5 NC_001806.1 + 4456 0.66 0.513934
Target:  5'- aGCCuGGCaUGgGCGCCgCGGGggGCCUg -3'
miRNA:   3'- aCGG-CUG-GCgCGCGGgGUCCagCGGG- -5'
5859 3' -65.5 NC_001806.1 + 118671 0.66 0.513934
Target:  5'- cGCgGGCaCGCGCGCCCUuaauGGaccggCGCg- -3'
miRNA:   3'- aCGgCUG-GCGCGCGGGGu---CCa----GCGgg -5'
5859 3' -65.5 NC_001806.1 + 149226 0.66 0.513934
Target:  5'- cGCUGGCCGcCGcCGCCagCAGGgggCGCa- -3'
miRNA:   3'- aCGGCUGGC-GC-GCGGg-GUCCa--GCGgg -5'
5859 3' -65.5 NC_001806.1 + 132115 0.66 0.513023
Target:  5'- cGCCGGagagacccgccccCCGC-CGCCCgGGccCGCCCc -3'
miRNA:   3'- aCGGCU-------------GGCGcGCGGGgUCcaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 95580 0.66 0.513023
Target:  5'- gGUCGGgggggacgggggcCCGgGaaCCCCGGGUCGCUCu -3'
miRNA:   3'- aCGGCU-------------GGCgCgcGGGGUCCAGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 84907 0.66 0.511203
Target:  5'- aGCCGAucagggccgcccccCCGCGCaugguGCCCCgcAGGaucUUGUCCa -3'
miRNA:   3'- aCGGCU--------------GGCGCG-----CGGGG--UCC---AGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 17020 0.66 0.504856
Target:  5'- aGCCcguGAUgGgCGCGCcuaCCCGGGggGCCCg -3'
miRNA:   3'- aCGG---CUGgC-GCGCG---GGGUCCagCGGG- -5'
5859 3' -65.5 NC_001806.1 + 150336 0.66 0.504856
Target:  5'- gGCCaGcACCGUGCGgCgCAGGUccCGCgCCg -3'
miRNA:   3'- aCGG-C-UGGCGCGCgGgGUCCA--GCG-GG- -5'
5859 3' -65.5 NC_001806.1 + 22611 0.66 0.504856
Target:  5'- cUGCaGGCUGCccuGCGCccgCCCGGGcCGCCg -3'
miRNA:   3'- -ACGgCUGGCG---CGCG---GGGUCCaGCGGg -5'
5859 3' -65.5 NC_001806.1 + 116709 0.66 0.504856
Target:  5'- aGCCGcuCgGCGCGCCC--GG-CGCCg -3'
miRNA:   3'- aCGGCu-GgCGCGCGGGguCCaGCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.