miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5859 5' -57.9 NC_001806.1 + 25389 0.66 0.79591
Target:  5'- gGAGGACgGCGCCgGGGCucucggggCCGCAGGa-- -3'
miRNA:   3'- -UUCUUG-CGCGGgUCCG--------GGCGUUUgua -5'
5859 5' -57.9 NC_001806.1 + 52415 0.66 0.79591
Target:  5'- aGGGGGCGCugGUCCGaGCCCGCAuguGCGc -3'
miRNA:   3'- -UUCUUGCG--CGGGUcCGGGCGUu--UGUa -5'
5859 5' -57.9 NC_001806.1 + 82268 0.66 0.79591
Target:  5'- cGGGGACGCGCUgaGGGCCaCGUGuAGCGc -3'
miRNA:   3'- -UUCUUGCGCGGg-UCCGG-GCGU-UUGUa -5'
5859 5' -57.9 NC_001806.1 + 49425 0.66 0.79591
Target:  5'- -cGAGCcgguCGCCCcgcGGCCCGCGuACAc -3'
miRNA:   3'- uuCUUGc---GCGGGu--CCGGGCGUuUGUa -5'
5859 5' -57.9 NC_001806.1 + 2460 0.66 0.79591
Target:  5'- uGGGGGCG-GCCCucAGGCCgGCGggUAc -3'
miRNA:   3'- -UUCUUGCgCGGG--UCCGGgCGUuuGUa -5'
5859 5' -57.9 NC_001806.1 + 65470 0.66 0.786701
Target:  5'- -cGAAgGcCGCCCAGcGCgCGUGGACGUa -3'
miRNA:   3'- uuCUUgC-GCGGGUC-CGgGCGUUUGUA- -5'
5859 5' -57.9 NC_001806.1 + 63616 0.66 0.786701
Target:  5'- cGGAacgACGCGCCCGGGgaCUCGC--GCAg -3'
miRNA:   3'- uUCU---UGCGCGGGUCC--GGGCGuuUGUa -5'
5859 5' -57.9 NC_001806.1 + 56844 0.66 0.786701
Target:  5'- gAAGAcCGuCGCCgCGGGCCCGgGgGGCAg -3'
miRNA:   3'- -UUCUuGC-GCGG-GUCCGGGCgU-UUGUa -5'
5859 5' -57.9 NC_001806.1 + 39117 0.66 0.786701
Target:  5'- uGGGGGCaGCGCCU-GGCCCaCGGGCGg -3'
miRNA:   3'- -UUCUUG-CGCGGGuCCGGGcGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 43604 0.66 0.786701
Target:  5'- cGGAcAUGCGCCCGcGGCCaGCGuACAg -3'
miRNA:   3'- uUCU-UGCGCGGGU-CCGGgCGUuUGUa -5'
5859 5' -57.9 NC_001806.1 + 1307 0.66 0.786701
Target:  5'- cGGAACcgaGCCCGgucGGCCCGCucGCGg -3'
miRNA:   3'- uUCUUGcg-CGGGU---CCGGGCGuuUGUa -5'
5859 5' -57.9 NC_001806.1 + 657 0.66 0.767864
Target:  5'- aGAGAGCGUGCCgGGGUgguagaguuugaCagGCAAGCAUg -3'
miRNA:   3'- -UUCUUGCGCGGgUCCG------------Gg-CGUUUGUA- -5'
5859 5' -57.9 NC_001806.1 + 91606 0.66 0.767864
Target:  5'- -cGAGCuCGUCCAGGUCC-CGAACGc -3'
miRNA:   3'- uuCUUGcGCGGGUCCGGGcGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 51519 0.66 0.758255
Target:  5'- -----gGCGCCCAGGUgCGCccGGACAg -3'
miRNA:   3'- uucuugCGCGGGUCCGgGCG--UUUGUa -5'
5859 5' -57.9 NC_001806.1 + 115521 0.66 0.758255
Target:  5'- gGGGGAUGCGCCCGGG-CgGgAAGCu- -3'
miRNA:   3'- -UUCUUGCGCGGGUCCgGgCgUUUGua -5'
5859 5' -57.9 NC_001806.1 + 25769 0.66 0.758255
Target:  5'- -cGGGCGCGuCCCcGGCCCGgAGGa-- -3'
miRNA:   3'- uuCUUGCGC-GGGuCCGGGCgUUUgua -5'
5859 5' -57.9 NC_001806.1 + 64125 0.66 0.758255
Target:  5'- gGAGGACGUGCuCCAGGgCgGUgguGGACAg -3'
miRNA:   3'- -UUCUUGCGCG-GGUCCgGgCG---UUUGUa -5'
5859 5' -57.9 NC_001806.1 + 8835 0.66 0.758255
Target:  5'- -cGAGCG-GCCC-GGCCCGCGc---- -3'
miRNA:   3'- uuCUUGCgCGGGuCCGGGCGUuugua -5'
5859 5' -57.9 NC_001806.1 + 125845 0.67 0.748533
Target:  5'- --cGGC-CGCCCGGGCCCaCGGGCGc -3'
miRNA:   3'- uucUUGcGCGGGUCCGGGcGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 78968 0.67 0.728782
Target:  5'- ----cCGcCGCCCuGGCCCGCGAGg-- -3'
miRNA:   3'- uucuuGC-GCGGGuCCGGGCGUUUgua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.