miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5867 3' -53.6 NC_001806.1 + 110872 0.66 0.972151
Target:  5'- gGGC-CCUGGGCGCG-GAUgCGAuccGUGa -3'
miRNA:   3'- aCCGaGGGCUUGCGCgCUA-GCUu--UAC- -5'
5867 3' -53.6 NC_001806.1 + 20112 0.66 0.970427
Target:  5'- cGGCgcgcguugccgagcaUCCCG-ACGCGCGGcUGgcGUGg -3'
miRNA:   3'- aCCG---------------AGGGCuUGCGCGCUaGCuuUAC- -5'
5867 3' -53.6 NC_001806.1 + 38571 0.66 0.969237
Target:  5'- cGGgaCCUGGugGCGCacGUCGAGGc- -3'
miRNA:   3'- aCCgaGGGCUugCGCGc-UAGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 87661 0.66 0.969237
Target:  5'- aGGCgcugcaucUCCaCGAGCGCGUaGUUGAGAa- -3'
miRNA:   3'- aCCG--------AGG-GCUUGCGCGcUAGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 117981 0.66 0.966112
Target:  5'- gGGgUCCCGGGgGCGgGAUgGGGu-- -3'
miRNA:   3'- aCCgAGGGCUUgCGCgCUAgCUUuac -5'
5867 3' -53.6 NC_001806.1 + 112122 0.66 0.962769
Target:  5'- uUGGC-CCCGAcgcucaGCGCGA-CGAAu-- -3'
miRNA:   3'- -ACCGaGGGCUug----CGCGCUaGCUUuac -5'
5867 3' -53.6 NC_001806.1 + 110418 0.66 0.962769
Target:  5'- gGGC-CCCGGGCGCGUacgugCGAGc-- -3'
miRNA:   3'- aCCGaGGGCUUGCGCGcua--GCUUuac -5'
5867 3' -53.6 NC_001806.1 + 61821 0.66 0.962769
Target:  5'- aGGC-CCCGAACcugaCGCGAcuuugCGAGcgGg -3'
miRNA:   3'- aCCGaGGGCUUGc---GCGCUa----GCUUuaC- -5'
5867 3' -53.6 NC_001806.1 + 37453 0.66 0.962769
Target:  5'- -uGUUCUCgGAGCGCGCG-UCGGAGg- -3'
miRNA:   3'- acCGAGGG-CUUGCGCGCuAGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 149434 0.66 0.959204
Target:  5'- gGGC-CCCGGGgGCGUGGagGggGg- -3'
miRNA:   3'- aCCGaGGGCUUgCGCGCUagCuuUac -5'
5867 3' -53.6 NC_001806.1 + 100920 0.66 0.959204
Target:  5'- gGGCguUCCCGAGCGgCGCaucuUCGGcgGGUGu -3'
miRNA:   3'- aCCG--AGGGCUUGC-GCGcu--AGCU--UUAC- -5'
5867 3' -53.6 NC_001806.1 + 23711 0.67 0.951385
Target:  5'- cGGCggCCCGcguccAGgGCGCGGUCGuAGcgGg -3'
miRNA:   3'- aCCGa-GGGC-----UUgCGCGCUAGC-UUuaC- -5'
5867 3' -53.6 NC_001806.1 + 100225 0.67 0.951385
Target:  5'- cGGCggcagCCCGGAgGCGCccgCGGAAa- -3'
miRNA:   3'- aCCGa----GGGCUUgCGCGcuaGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 129984 0.67 0.942621
Target:  5'- gUGGCUCCaGAacccGCGCGUGGUCc----- -3'
miRNA:   3'- -ACCGAGGgCU----UGCGCGCUAGcuuuac -5'
5867 3' -53.6 NC_001806.1 + 102793 0.67 0.937878
Target:  5'- cUGGgUCCCGucGACGCGCGGgcuauuUUGggGc- -3'
miRNA:   3'- -ACCgAGGGC--UUGCGCGCU------AGCuuUac -5'
5867 3' -53.6 NC_001806.1 + 28861 0.67 0.937878
Target:  5'- cGGCuaaagUCCCGcGCGCGCuua-GAGAUGa -3'
miRNA:   3'- aCCG-----AGGGCuUGCGCGcuagCUUUAC- -5'
5867 3' -53.6 NC_001806.1 + 143060 0.68 0.92218
Target:  5'- gGGUguggCGAGgGCGCGGUCGAcGUGg -3'
miRNA:   3'- aCCGagg-GCUUgCGCGCUAGCUuUAC- -5'
5867 3' -53.6 NC_001806.1 + 133477 0.68 0.916457
Target:  5'- gGGUUCCgCGGugGCGuCGaAUCGAGc-- -3'
miRNA:   3'- aCCGAGG-GCUugCGC-GC-UAGCUUuac -5'
5867 3' -53.6 NC_001806.1 + 125458 0.68 0.915871
Target:  5'- cUGGCgcgCCUGcgccugcGACGCGCGggCGggGa- -3'
miRNA:   3'- -ACCGa--GGGC-------UUGCGCGCuaGCuuUac -5'
5867 3' -53.6 NC_001806.1 + 98600 0.68 0.91049
Target:  5'- cGGCagCCCcAGCGCGUugcgGGUCGAAGUu -3'
miRNA:   3'- aCCGa-GGGcUUGCGCG----CUAGCUUUAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.