miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5868 5' -57.7 NC_001806.1 + 38112 0.66 0.880222
Target:  5'- uCCCggagAUCGCCCCCGgcgaggagugccCCAgcGAC-CCCGu -3'
miRNA:   3'- -GGG----UGGCGGGGGU------------GGUauUUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 131006 0.66 0.880222
Target:  5'- cCCCgACCaCCCCCACgAccucGACgacgCCCGg -3'
miRNA:   3'- -GGG-UGGcGGGGGUGgUau--UUGa---GGGC- -5'
5868 5' -57.7 NC_001806.1 + 77440 0.66 0.880222
Target:  5'- gUCCugCGCCCCCuCCcugacuuuGUGGGCUaaaggccugUCCGg -3'
miRNA:   3'- -GGGugGCGGGGGuGG--------UAUUUGA---------GGGC- -5'
5868 5' -57.7 NC_001806.1 + 70516 0.66 0.880222
Target:  5'- aCCCACCaaauagcgGCCCCCAggac-GAgUCCCGc -3'
miRNA:   3'- -GGGUGG--------CGGGGGUgguauUUgAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 14126 0.66 0.880222
Target:  5'- aUCACCaaCCCCGCCAac--CUCCCc -3'
miRNA:   3'- gGGUGGcgGGGGUGGUauuuGAGGGc -5'
5868 5' -57.7 NC_001806.1 + 131111 0.66 0.880222
Target:  5'- cCCCaccgacggGCCGCCgCCCACCccGAGC-CCa- -3'
miRNA:   3'- -GGG--------UGGCGG-GGGUGGuaUUUGaGGgc -5'
5868 5' -57.7 NC_001806.1 + 128535 0.66 0.880222
Target:  5'- gCCGggcCCGCCCCCGCCg------CCCa -3'
miRNA:   3'- gGGU---GGCGGGGGUGGuauuugaGGGc -5'
5868 5' -57.7 NC_001806.1 + 76331 0.66 0.880222
Target:  5'- aCCAgCGCCaCC-CCAU--GCUCCCc -3'
miRNA:   3'- gGGUgGCGGgGGuGGUAuuUGAGGGc -5'
5868 5' -57.7 NC_001806.1 + 40643 0.66 0.880222
Target:  5'- cCCCaugGCCGCUCCCaACCGcgaccCUCCgGg -3'
miRNA:   3'- -GGG---UGGCGGGGG-UGGUauuu-GAGGgC- -5'
5868 5' -57.7 NC_001806.1 + 72347 0.66 0.879529
Target:  5'- uCCCGuuCCGCCCCCggucgcaACCGgc-ACgguuuugCCCGg -3'
miRNA:   3'- -GGGU--GGCGGGGG-------UGGUauuUGa------GGGC- -5'
5868 5' -57.7 NC_001806.1 + 77981 0.66 0.879529
Target:  5'- uCCCGCCccGCCCCCgaucgcgACCA---GC-CCCa -3'
miRNA:   3'- -GGGUGG--CGGGGG-------UGGUauuUGaGGGc -5'
5868 5' -57.7 NC_001806.1 + 59931 0.66 0.879529
Target:  5'- aUCugCGCCCCCagccuaacggccgGCCAgacGGCcCCCGc -3'
miRNA:   3'- gGGugGCGGGGG-------------UGGUau-UUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 131683 0.66 0.873201
Target:  5'- aCCCAcCCGCCCUCGC-----GC-CCCGc -3'
miRNA:   3'- -GGGU-GGCGGGGGUGguauuUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 125571 0.66 0.873201
Target:  5'- cCCCACCGCCC--GgCGUGGGC-CCgGg -3'
miRNA:   3'- -GGGUGGCGGGggUgGUAUUUGaGGgC- -5'
5868 5' -57.7 NC_001806.1 + 121424 0.66 0.873201
Target:  5'- uCCCuCgGCCCCCGCgCu---GCUUCUGg -3'
miRNA:   3'- -GGGuGgCGGGGGUG-GuauuUGAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 79203 0.66 0.873201
Target:  5'- gCCGCgGUCCCCGCCuccg--UUCCGg -3'
miRNA:   3'- gGGUGgCGGGGGUGGuauuugAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 55897 0.66 0.873201
Target:  5'- uCCCGCCaugcgccagggcGCCCCCGCgCGgGGGCg-CCGg -3'
miRNA:   3'- -GGGUGG------------CGGGGGUG-GUaUUUGagGGC- -5'
5868 5' -57.7 NC_001806.1 + 36445 0.66 0.873201
Target:  5'- cCCCGCCcccuuuGUCCCCGCCGacAAGCcgcgaUUCCGa -3'
miRNA:   3'- -GGGUGG------CGGGGGUGGUa-UUUG-----AGGGC- -5'
5868 5' -57.7 NC_001806.1 + 50675 0.66 0.873201
Target:  5'- cCCCcUCGCCCaCCACCcacUAAAC-CgCCGa -3'
miRNA:   3'- -GGGuGGCGGG-GGUGGu--AUUUGaG-GGC- -5'
5868 5' -57.7 NC_001806.1 + 113566 0.66 0.873201
Target:  5'- uUCCGCCccccgggcgggGCCCCCGCCccac-CUCCgGc -3'
miRNA:   3'- -GGGUGG-----------CGGGGGUGGuauuuGAGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.