miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5870 3' -68.6 NC_001806.1 + 15604 0.66 0.414712
Target:  5'- cUCCCGGGcGUUCCUGuaCCGgCGAACc -3'
miRNA:   3'- -AGGGCCC-CGGGGGCccGGCgGCUUGc -5'
5870 3' -68.6 NC_001806.1 + 98360 0.66 0.414712
Target:  5'- gUCgCCGGGGCgCUacaGCCGCCGAcCGc -3'
miRNA:   3'- -AG-GGCCCCGgGGgccCGGCGGCUuGC- -5'
5870 3' -68.6 NC_001806.1 + 130196 0.66 0.414712
Target:  5'- -gCCGGGcccccGCCCCCGGGgCggguGCUGuACGg -3'
miRNA:   3'- agGGCCC-----CGGGGGCCCgG----CGGCuUGC- -5'
5870 3' -68.6 NC_001806.1 + 5052 0.66 0.413917
Target:  5'- cCCCGGcggcggaagaggcGGCCCCCgcggGGGUCgggGCCGAGg- -3'
miRNA:   3'- aGGGCC-------------CCGGGGG----CCCGG---CGGCUUgc -5'
5870 3' -68.6 NC_001806.1 + 101034 0.66 0.413917
Target:  5'- aCCgGcGGGUCCCgaccgaaCGGGCgucaccaugcagCGCCGGACGc -3'
miRNA:   3'- aGGgC-CCCGGGG-------GCCCG------------GCGGCUUGC- -5'
5870 3' -68.6 NC_001806.1 + 150719 0.66 0.406808
Target:  5'- cUCCGcGGCCCgcgccaCCGGGCCggGCCGGcGCGc -3'
miRNA:   3'- aGGGCcCCGGG------GGCCCGG--CGGCU-UGC- -5'
5870 3' -68.6 NC_001806.1 + 59667 0.66 0.406808
Target:  5'- uUCCCcaacGGcaaGCCCCCGGGguccaaCCaGCCGAACc -3'
miRNA:   3'- -AGGG----CCc--CGGGGGCCC------GG-CGGCUUGc -5'
5870 3' -68.6 NC_001806.1 + 949 0.66 0.406808
Target:  5'- -gCC-GGGCCUCUGGcGCCGgCuCGGGCGg -3'
miRNA:   3'- agGGcCCCGGGGGCC-CGGC-G-GCUUGC- -5'
5870 3' -68.6 NC_001806.1 + 122049 0.66 0.406023
Target:  5'- nCCCGcGcGCCCCCGcgcGGCCGUggccccgugcgugCGAGCGc -3'
miRNA:   3'- aGGGCcC-CGGGGGC---CCGGCG-------------GCUUGC- -5'
5870 3' -68.6 NC_001806.1 + 4957 0.66 0.404455
Target:  5'- gUCCCGGGcccacccuggccgcGCCCCCccGGCC-CUGAGuCGg -3'
miRNA:   3'- -AGGGCCC--------------CGGGGGc-CCGGcGGCUU-GC- -5'
5870 3' -68.6 NC_001806.1 + 132904 0.66 0.398999
Target:  5'- cUCCgGGGGgCCCUacGGCCaCCGAuGCGg -3'
miRNA:   3'- -AGGgCCCCgGGGGc-CCGGcGGCU-UGC- -5'
5870 3' -68.6 NC_001806.1 + 1285 0.66 0.398999
Target:  5'- gCUCGcGGGCCCacgagCCGcGGCgCGCCaGGCGg -3'
miRNA:   3'- aGGGC-CCCGGG-----GGC-CCG-GCGGcUUGC- -5'
5870 3' -68.6 NC_001806.1 + 120380 0.66 0.398999
Target:  5'- gCCCGGacugaccuGGCCUCU-GGCCGCCacaaaGGGCGg -3'
miRNA:   3'- aGGGCC--------CCGGGGGcCCGGCGG-----CUUGC- -5'
5870 3' -68.6 NC_001806.1 + 79054 0.66 0.398999
Target:  5'- gCCCGa-GCCCCCGGGCgcagaccuCGCCcAGCu -3'
miRNA:   3'- aGGGCccCGGGGGCCCG--------GCGGcUUGc -5'
5870 3' -68.6 NC_001806.1 + 124488 0.66 0.398224
Target:  5'- -aCCGgguuGGGCCCCCaaaucggGGGCCggGCCGuGCa -3'
miRNA:   3'- agGGC----CCCGGGGG-------CCCGG--CGGCuUGc -5'
5870 3' -68.6 NC_001806.1 + 67820 0.66 0.39436
Target:  5'- -aCgGGGGCCgguuugugagccugcUUCGGGCCGCgGGGCc -3'
miRNA:   3'- agGgCCCCGG---------------GGGCCCGGCGgCUUGc -5'
5870 3' -68.6 NC_001806.1 + 26280 0.66 0.391287
Target:  5'- -gCUGGGGCCCCCaGGGuCCGUg----- -3'
miRNA:   3'- agGGCCCCGGGGG-CCC-GGCGgcuugc -5'
5870 3' -68.6 NC_001806.1 + 72784 0.66 0.391287
Target:  5'- -aCCGcGGCCCCCuGGGCCGgCagucACGg -3'
miRNA:   3'- agGGCcCCGGGGG-CCCGGCgGcu--UGC- -5'
5870 3' -68.6 NC_001806.1 + 127632 0.66 0.391287
Target:  5'- -gCUGGGGCCU--GGGCgCGCCGcuGCGg -3'
miRNA:   3'- agGGCCCCGGGggCCCG-GCGGCu-UGC- -5'
5870 3' -68.6 NC_001806.1 + 77021 0.66 0.390521
Target:  5'- gUCCUGGucgacgcggugacGGCCCUgggCGcGGCCGCC-AGCGa -3'
miRNA:   3'- -AGGGCC-------------CCGGGG---GC-CCGGCGGcUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.