miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5874 3' -59.3 NC_001806.1 + 135543 0.66 0.835651
Target:  5'- cGGGGCGuCCucgucgacaucguccGCGGCauccGCGcUGGggUCGu -3'
miRNA:   3'- -CCCCGC-GG---------------UGCCGc---UGCaGCCuuAGC- -5'
5874 3' -59.3 NC_001806.1 + 29919 0.66 0.832467
Target:  5'- gGGGGaCGagaaaCACGGUGGCGcgcuggCGGAAguggCGc -3'
miRNA:   3'- -CCCC-GCg----GUGCCGCUGCa-----GCCUUa---GC- -5'
5874 3' -59.3 NC_001806.1 + 4624 0.66 0.832467
Target:  5'- uGGGGCa-CACGGCGcGCGUCcgcGGGG-CGg -3'
miRNA:   3'- -CCCCGcgGUGCCGC-UGCAG---CCUUaGC- -5'
5874 3' -59.3 NC_001806.1 + 83135 0.66 0.832467
Target:  5'- cGGGGaCGCUaAUGGCGcGCGUgCGGA--CGg -3'
miRNA:   3'- -CCCC-GCGG-UGCCGC-UGCA-GCCUuaGC- -5'
5874 3' -59.3 NC_001806.1 + 61062 0.66 0.832467
Target:  5'- cGGGGCGUaccUGGCGcGCGccgCGGGAcUCGu -3'
miRNA:   3'- -CCCCGCGgu-GCCGC-UGCa--GCCUU-AGC- -5'
5874 3' -59.3 NC_001806.1 + 24852 0.66 0.832467
Target:  5'- gGGGGgGggACGGUGAUaGUaaCGGGAUCGg -3'
miRNA:   3'- -CCCCgCggUGCCGCUG-CA--GCCUUAGC- -5'
5874 3' -59.3 NC_001806.1 + 4478 0.66 0.832467
Target:  5'- gGGGGC-CCGgGGCGGgGggCGGAGc-- -3'
miRNA:   3'- -CCCCGcGGUgCCGCUgCa-GCCUUagc -5'
5874 3' -59.3 NC_001806.1 + 60020 0.66 0.82439
Target:  5'- -cGGUGCUGCGGCGGCG-CGuGAUgGa -3'
miRNA:   3'- ccCCGCGGUGCCGCUGCaGCcUUAgC- -5'
5874 3' -59.3 NC_001806.1 + 142147 0.66 0.82439
Target:  5'- -cGGCG-CACGGCG-CGUCGGc--CGg -3'
miRNA:   3'- ccCCGCgGUGCCGCuGCAGCCuuaGC- -5'
5874 3' -59.3 NC_001806.1 + 49993 0.66 0.82439
Target:  5'- aGGaaCGCgGCGGCGGCG-CGGuuuauGUCGu -3'
miRNA:   3'- -CCccGCGgUGCCGCUGCaGCCu----UAGC- -5'
5874 3' -59.3 NC_001806.1 + 123160 0.66 0.823573
Target:  5'- cGGGGCugcugggGCCGCagGGCGugGaUGGGGgggCGg -3'
miRNA:   3'- -CCCCG-------CGGUG--CCGCugCaGCCUUa--GC- -5'
5874 3' -59.3 NC_001806.1 + 118896 0.66 0.823573
Target:  5'- gGGGGCccggagaGCCGCGGCacccgGACGcgccCGGAaaGUCu -3'
miRNA:   3'- -CCCCG-------CGGUGCCG-----CUGCa---GCCU--UAGc -5'
5874 3' -59.3 NC_001806.1 + 82691 0.66 0.823573
Target:  5'- aGGGCGCCagcgagcacacgcACgGGCGGCucugcgaggcgGUCGGccuGUCGg -3'
miRNA:   3'- cCCCGCGG-------------UG-CCGCUG-----------CAGCCu--UAGC- -5'
5874 3' -59.3 NC_001806.1 + 108465 0.66 0.821935
Target:  5'- -uGGCGCCugccgcccgaaACGGCGACGcccUcccggaccccaaacCGGAAUCGu -3'
miRNA:   3'- ccCCGCGG-----------UGCCGCUGC---A--------------GCCUUAGC- -5'
5874 3' -59.3 NC_001806.1 + 121874 0.66 0.816152
Target:  5'- cGGGCGCgugcgACGGUGGCGcgCGGc-UCGg -3'
miRNA:   3'- cCCCGCGg----UGCCGCUGCa-GCCuuAGC- -5'
5874 3' -59.3 NC_001806.1 + 1845 0.66 0.816152
Target:  5'- aGGGGagugGUUACGcGCGGCG-CGGGAggCGg -3'
miRNA:   3'- -CCCCg---CGGUGC-CGCUGCaGCCUUa-GC- -5'
5874 3' -59.3 NC_001806.1 + 114029 0.66 0.816152
Target:  5'- -aGGCGUCugGGUGcuggguACGcCGGggUCu -3'
miRNA:   3'- ccCCGCGGugCCGC------UGCaGCCuuAGc -5'
5874 3' -59.3 NC_001806.1 + 86959 0.66 0.80776
Target:  5'- gGGGGCccccaaggGCCuCGGUgggGACGUCGGccGUCu -3'
miRNA:   3'- -CCCCG--------CGGuGCCG---CUGCAGCCu-UAGc -5'
5874 3' -59.3 NC_001806.1 + 127314 0.66 0.80776
Target:  5'- gGGaGGCGCCugGGacgaaGACGaCGGcggCGc -3'
miRNA:   3'- -CC-CCGCGGugCCg----CUGCaGCCuuaGC- -5'
5874 3' -59.3 NC_001806.1 + 147303 0.66 0.80776
Target:  5'- gGGGGCccucccgucccGCCG-GGCGuCGUC-GAGUCGu -3'
miRNA:   3'- -CCCCG-----------CGGUgCCGCuGCAGcCUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.