miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5874 5' -53 NC_001806.1 + 20294 0.66 0.975022
Target:  5'- cCUGGCGGcccuggAGCGCCAGAccgGGC-CGGUg -3'
miRNA:   3'- cGGCUGUCa-----UUGCGGUCU---UCGaGCUA- -5'
5874 5' -53 NC_001806.1 + 17595 0.66 0.972286
Target:  5'- gGCCGuCAGgacCGCCAccgcGAAGCcgCGAUa -3'
miRNA:   3'- -CGGCuGUCauuGCGGU----CUUCGa-GCUA- -5'
5874 5' -53 NC_001806.1 + 132073 0.66 0.972001
Target:  5'- gGCCGGCgcggAGUcgggcacGGCGCCAGu-GCUCGc- -3'
miRNA:   3'- -CGGCUG----UCA-------UUGCGGUCuuCGAGCua -5'
5874 5' -53 NC_001806.1 + 89960 0.66 0.969341
Target:  5'- -aCGACAGUGGCGgCGGGccuGGCgCGGa -3'
miRNA:   3'- cgGCUGUCAUUGCgGUCU---UCGaGCUa -5'
5874 5' -53 NC_001806.1 + 15260 0.66 0.969341
Target:  5'- gGCCGGCGGggAGCGCCAGcuAGa-CGGa -3'
miRNA:   3'- -CGGCUGUCa-UUGCGGUCu-UCgaGCUa -5'
5874 5' -53 NC_001806.1 + 133157 0.66 0.962792
Target:  5'- gGCCGACGGggugGGgGCCcGggGCUgCGu- -3'
miRNA:   3'- -CGGCUGUCa---UUgCGGuCuuCGA-GCua -5'
5874 5' -53 NC_001806.1 + 72770 0.66 0.962792
Target:  5'- gGCCGGCAGUcACGgCucgcGAAGCaCGAc -3'
miRNA:   3'- -CGGCUGUCAuUGCgGu---CUUCGaGCUa -5'
5874 5' -53 NC_001806.1 + 60723 0.66 0.962792
Target:  5'- cGCCGugAucGUcgGGCGCCAGGAGauggacguguUUCGAUa -3'
miRNA:   3'- -CGGCugU--CA--UUGCGGUCUUC----------GAGCUA- -5'
5874 5' -53 NC_001806.1 + 136523 0.66 0.962441
Target:  5'- gGCCGcgcgggaGCGGUAGCGCgAGGugaGGCgCGAUu -3'
miRNA:   3'- -CGGC-------UGUCAUUGCGgUCU---UCGaGCUA- -5'
5874 5' -53 NC_001806.1 + 1112 0.66 0.959178
Target:  5'- cGUCGcaggcGCAGgcGCGCCAGguGCUCc-- -3'
miRNA:   3'- -CGGC-----UGUCauUGCGGUCuuCGAGcua -5'
5874 5' -53 NC_001806.1 + 101896 0.66 0.958048
Target:  5'- uGCUGGCGGUGAUGgCGGAgcagacgguccaguGGCUCu-- -3'
miRNA:   3'- -CGGCUGUCAUUGCgGUCU--------------UCGAGcua -5'
5874 5' -53 NC_001806.1 + 961 0.67 0.955328
Target:  5'- cGgCGGCGGUGG-GCCGGGccucuggcgccGGCUCGGg -3'
miRNA:   3'- -CgGCUGUCAUUgCGGUCU-----------UCGAGCUa -5'
5874 5' -53 NC_001806.1 + 129501 0.67 0.95124
Target:  5'- cGCCGACGacGACGCCGGgcGC-CGc- -3'
miRNA:   3'- -CGGCUGUcaUUGCGGUCuuCGaGCua -5'
5874 5' -53 NC_001806.1 + 121865 0.67 0.95124
Target:  5'- -gCGACGGUGGCGCgc--GGCUCGGg -3'
miRNA:   3'- cgGCUGUCAUUGCGgucuUCGAGCUa -5'
5874 5' -53 NC_001806.1 + 146680 0.67 0.946909
Target:  5'- cCCGACGccGgcACGCCGGggGCcCGu- -3'
miRNA:   3'- cGGCUGU--CauUGCGGUCuuCGaGCua -5'
5874 5' -53 NC_001806.1 + 149170 0.67 0.946909
Target:  5'- -gCGGCGGcGGCgGCCGcGGAGCUCGGc -3'
miRNA:   3'- cgGCUGUCaUUG-CGGU-CUUCGAGCUa -5'
5874 5' -53 NC_001806.1 + 56699 0.67 0.942332
Target:  5'- uCCGcgAGcAGCGCgGGGAGCUCGAg -3'
miRNA:   3'- cGGCugUCaUUGCGgUCUUCGAGCUa -5'
5874 5' -53 NC_001806.1 + 148009 0.67 0.942332
Target:  5'- cGCCGGaGGUcGCGUCGGcguccAGCUCGAc -3'
miRNA:   3'- -CGGCUgUCAuUGCGGUCu----UCGAGCUa -5'
5874 5' -53 NC_001806.1 + 44209 0.67 0.942332
Target:  5'- gGCCGACGGagGGCGCCccAAGCguguuuUCGAg -3'
miRNA:   3'- -CGGCUGUCa-UUGCGGucUUCG------AGCUa -5'
5874 5' -53 NC_001806.1 + 118452 0.67 0.937505
Target:  5'- gGCCGGCGGguggacuCGCgGGggGC-CGGa -3'
miRNA:   3'- -CGGCUGUCauu----GCGgUCuuCGaGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.